ggKbase home page

SCNpilot_expt_500_bf_scaffold_6453_13

Organism: SCNPILOT_EXPT_500_BF_STEP10_Sphingopyxis_65_8

near complete RP 50 / 55 BSCG 50 / 51 ASCG 11 / 38
Location: comp(7782..10211)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.9
  • Coverage: 765.0
  • Bit_score: 1495
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 94.4
  • Coverage: 765.0
  • Bit_score: 1428
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVX5_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 99.9
  • Coverage: 765.0
  • Bit_score: 1495
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Sphingopyxis sp. MC1 → Sphingopyxis → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2430
CACCCGCTGGTCTGCGCCGCGTTCAACGCCGACTTCGACGGCGACCAGATGGCCGTGCACGTCCCGCTGAGCCTCGAAGCGCAGCTGGAAGCGCGCGTGCTGATGATGTCGACCAACAACATCCTCAGCCCCGCGAACGGCAAGCCGATCATCGTTCCGTCGCAGGACATGGTCCTCGGCCTCTATTATCTGTCGATGGAACGCGAAGGCGAACCGGGCGAGGGCATGCTGCTCGCCGACATGGCCGAAGTGCACCAGGCGCTCTACACGGGCGCGGTCACGCTGCACTCGAAGATCACCAGCCGCGTTCCGCAGACCGACGAAGCAGGCAATGAGTATCTGCGCCGCTTCGAAACGACGCCGGGCCGCATGCTGATCGGCGAATGCCTGCCGAAGTCGCACACGGTGCCCTTCGACGTCGTCAACCGCCTTCTGACCAAGAAGGAAATCGGCGACGTGATCGACCAGGTCTATCGTCACACCGGCCAGAAGGAGACGGTGCTGTTCGCCGACGCGATCATGGCGCTGGGCTTCCGCCACGCGTTCCGTGCCGGCATCTCGTTCGGCAAGGACGACATGATCATCCCCGACGCCAAGGAAAAGTTGGTCGACGAGACCCGCGCGCTGGTGAAGGATTTCGAGCAGCAGTATCAGGACGGCCTGATCACGCAGCAGGAAAAGTACAATAAGGCCATTGATGCGTGGTCGCAGTGCGGTGACAAGGTCGCGAACGCGATGATGGACGAAATCCGGGCGACGCCGAAGCTCGACGACGGCCGGCTTGCTCCGGTCAACTCGATCTACATGATGGCACACTCGGGCGCGCGTGGTTCGCCGGCGCAGATGAAGCAGCTCGCCGGCATGCGCGGCCTGATGGCCAAGCCGTCGGGCGAGATCATCGAAACGCCGATCATCTCGAACTTCAAGGAAGGCCTGACCGTTCTCGAGTATTTCAACTCGACCCACGGTGCCCGTAAGGGTCTGGCCGACACCGCGCTCAAGACGGCGAACTCGGGTTACCTGACCCGCCGTCTGGTCGACGTGTCGCAGGACTGCGTCGTGATCGAGGATGATTGCGGCACGACCCGTGGTATGGAAATGCGCGCGATCATCCAGGGCGGTTCGACGATCGCCTCGCTGGGCGAGCGCATCCTGGGCCGTACGACGCTCGAGGATGTTGCCGACAAGGACGGCAATGTCATCGCTCCCGTCGGCACGCTGCTCGACGAAGCCACGGTCGCCCGGATCGAGGAAGCCGAAGTGCAGGCGGTGAAGATCCGCTCGCCGCTGGTCTGCGAAGCCAGCTTGGGCGTCTGCGCCAAATGCTACGGCCGCGACCTTGCGCGCGGTACGCCGGTGAACATCGGTGAAGCGGTTGGCGTCATCGCGGCGCAGTCGATCGGTGAACCGGGTACGCAGCTGACGATGCGGACCTTCCACATCGGCGGTGCGGCGCAGGTCAACGAACAGTCGAACCTTGAAGCGATTTCGGACGGCACGATCGAATATCGCGACATGGAAACGATCGTCGACCAGCGCGGTCGCCGTCTGGCGCTGTCGCGTTCGGGTGAAATCGCGGTCATCGACAGCGAAGGCCGCGAACGCGCGACGCACAAGCTGCCCTATGGTGCACAGATCATGCACAAGAACGGCGAGAAGGTGAAGAAGGGCGACCGGATTGCCGAATGGGATCCGTTCACCATGCCGCTCATCACCGAAAAGAATGGCATCGTGAAGTATCAGGATCTGGTCGATGCCAAGACGCTGACCGAACAGGTCGACGAAGCGACGGGTATCGCCCAGCGCGTCGTGATCGAATATCGCACCACCGGTCGCGGCAAGAAGGAAGACCTTCAGCCGCGCCTGACCCTGCTCGACGATGCGTCGGGTGAAGCCGCGCGCTATCTGCTCGCGGTCGGCACGATGATCTCGGTCGAAGACGGTCAGGAAGTGAAGGCGGGCGACGTTCTGGCCCGTGTCACCCGCGAAGCGTCGAAGACGCGCGACATCACCGGCGGTCTGCCGCGTGTTGCCGAGCTGTTCGAAGCGCGCATTCCGAAGGACAATGCGGTCATCGCAAAGCTTTCGGGTCGCATCGAATTCGTCAAGGATTACAAGGCGAAGCGCAAGATCGCGATCGTTCCGGAAGAGGGCGATGCGGTCGAGTATCTGATCCCGAAATCCAAGGTGCTCGAAGTGCAGGAAGGCGACTATGTGAAGCGCGGCGACGCGCTGATCTCGGGCTCGCCGAACCCGCACGACATCCTTGACGTGATGGGTGTCGAAGCGACTGCAGGGCGTGAAGATCAACGACAAGCACATCGAGGTGATCGTTCGCCAGATGCTGCAGAAGGTCGAGATCACCGACGGCGGCGACACCACGCTGCTGCCGGGCGAACAGCTCGATTATCTGGAGATGATGGAATATAA
PROTEIN sequence
Length: 810
HPLVCAAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMEREGEPGEGMLLADMAEVHQALYTGAVTLHSKITSRVPQTDEAGNEYLRRFETTPGRMLIGECLPKSHTVPFDVVNRLLTKKEIGDVIDQVYRHTGQKETVLFADAIMALGFRHAFRAGISFGKDDMIIPDAKEKLVDETRALVKDFEQQYQDGLITQQEKYNKAIDAWSQCGDKVANAMMDEIRATPKLDDGRLAPVNSIYMMAHSGARGSPAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVSQDCVVIEDDCGTTRGMEMRAIIQGGSTIASLGERILGRTTLEDVADKDGNVIAPVGTLLDEATVARIEEAEVQAVKIRSPLVCEASLGVCAKCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQVNEQSNLEAISDGTIEYRDMETIVDQRGRRLALSRSGEIAVIDSEGRERATHKLPYGAQIMHKNGEKVKKGDRIAEWDPFTMPLITEKNGIVKYQDLVDAKTLTEQVDEATGIAQRVVIEYRTTGRGKKEDLQPRLTLLDDASGEAARYLLAVGTMISVEDGQEVKAGDVLARVTREASKTRDITGGLPRVAELFEARIPKDNAVIAKLSGRIEFVKDYKAKRKIAIVPEEGDAVEYLIPKSKVLEVQEGDYVKRGDALISGSPNPHDILDVMGVEATAGREDQRQAHRGDRSPDAAEGRDHRRRRHHAAAGRTARLSGDDGI*