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AMDSBA5_11

Alias: AMDSBA5_C10

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Displaying items 1-30 of 107 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA5_11_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3..920
-----------------
DNA (918bp)
protein (306aa)
ABC transporter periplasmic protein
Extracellular solute-binding protein n=3 Tax=Acidiphilium RepID=F7SBD3_9PROT (db=UNIREF evalue=4.7e-30 bit_score=137.5 identity=34.0 coverage=78.43137254901961)
seg (db=Seg db_id=seg from=16 to=28)
seg (db=Seg db_id=seg from=148 to=157)
AMDSBA5_11_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

880..1758
-----------------
DNA (879bp)
protein (293aa)
family 5 extracellular solute-binding protein
ABC-type transporter, periplasmic subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8TX08_9FIRM (db=UNIREF evalue=1.1e-60 bit_score=239.2 identity=43.2 coverage=99.31740614334471)
seg (db=Seg db_id=seg from=198 to=208)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=10 to=290 evalue=4.9e-33)
AMDSBA5_11_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1861..2754
-----------------
DNA (894bp)
protein (298aa)
ABC transporter
Oligopeptide ABC transporter integral membrane protein n=3 Tax=Streptomyces RepID=D6EKU4_STRLI (db=UNIREF evalue=4.0e-58 bit_score=230.7 identity=42.8 coverage=89.93288590604027)
seg (db=Seg db_id=seg from=159 to=169)
transmembrane_regions (db=TMHMM db_id=tmhmm from=98 to=120)
AMDSBA5_11_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2770..3723
-----------------
DNA (954bp)
protein (318aa)
ABC transporter
Putative uncharacterized protein n=1 Tax=Dialister succinatiphilus YIT 11850 RepID=H1D0N0_9FIRM (db=UNIREF evalue=8.9e-56 bit_score=223.0 identity=32.7 coverage=97.79874213836479)
seg (db=Seg db_id=seg from=284 to=295)
transmembrane_regions (db=TMHMM db_id=tmhmm from=94 to=116)
AMDSBA5_11_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4284..5804)
-----------------
DNA (1521bp)
protein (507aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=31 to=499 evalue=2.7e-38)
(db=HMMPfam db_id=PF00496 from=82 to=388 evalue=5.8e-23 interpro_id=IPR000914 interpro_description=Bacterial extracellular solute-binding protein, family 5 GO=Molecular Function: transporter activity (GO:0005215), Biological Process: transport (GO:0006810))
no description (db=Gene3D db_id=G3DSA:3.90.76.10 from=51 to=171 evalue=2.9e-21)
AMDSBA5_11_6
unknown

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5888..6316
-----------------
DNA (429bp)
protein (143aa)
(db=HMMPfam db_id=PF08915 from=1 to=121 evalue=2.8e-09 interpro_id=IPR015011 interpro_description=Threonyl-tRNA synthetase, editing domain, archaea GO=Molecular Function: threonine-tRNA ligase activity (GO:0004829), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Molecular Function: zinc ion binding (GO:0008270))
SYT_NANEQ_Q74MP3; (db=BlastProDom db_id=PD016189 from=1 to=119 evalue=0.0008 interpro_id=IPR015011 interpro_description=Threonyl-tRNA synthetase, editing domain, archaea GO=Molecular Function: threonine-tRNA ligase activity (GO:0004829), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Molecular Function: zinc ion binding (GO:0008270))
AMDSBA5_11_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6355..7308)
-----------------
DNA (954bp)
protein (318aa)
ABC transporter rbh
ABC transporter rbh
ABC-type transporter, integral membrane subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8U1I4_9FIRM (db=UNIREF evalue=5.8e-148 bit_score=529.3 identity=77.9 coverage=99.37106918238993)
seg (db=Seg db_id=seg from=298 to=309)
AMDSBA5_11_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7323..8234)
-----------------
DNA (912bp)
protein (304aa)
binding-protein-dependent transport system inner membrane protein
Peptide/nickel/opine uptake family ABC transporter, permease protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U463_9RHOB (db=UNIREF evalue=3.6e-62 bit_score=244.2 identity=44.0 coverage=97.03947368421053)
transmembrane_regions (db=TMHMM db_id=tmhmm from=105 to=127)
transmembrane_regions (db=TMHMM db_id=tmhmm from=37 to=59)
AMDSBA5_11_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8480..9394
-----------------
DNA (915bp)
protein (305aa)
Mg2 transporter protein CorA family protein
Magnesium transporter CorA n=1 Tax=Gordonia amarae NBRC 15530 RepID=G7GRC5_9ACTO (db=UNIREF evalue=9.8e-12 bit_score=76.6 identity=23.2 coverage=85.24590163934425)
seg (db=Seg db_id=seg from=282 to=295)
transmembrane_regions (db=TMHMM db_id=tmhmm from=278 to=298)
AMDSBA5_11_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9678..11288
-----------------
DNA (1611bp)
protein (537aa)
ABC transporter periplasmic protein
ABC-type transporter, periplasmic subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8TX08_9FIRM (db=UNIREF evalue=2.5e-167 bit_score=594.3 identity=53.0 coverage=98.88268156424581)
seg (db=Seg db_id=seg from=92 to=103)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=20 to=536 evalue=3.8e-61)
AMDSBA5_11_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11777..13516
-----------------
DNA (1740bp)
protein (580aa)
ABC-type transporter, periplasmic subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8TX08_9FIRM (db=UNIREF evalue=2.3e-171 bit_score=607.8 identity=51.1 coverage=99.48275862068967)
ABC transporter periplasmic protein
seg (db=Seg db_id=seg from=22 to=34)
seg (db=Seg db_id=seg from=262 to=277)
AMDSBA5_11_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13654..14904
-----------------
DNA (1251bp)
protein (417aa)
rocD; acetylornithine and succinylornithine aminotransferase
Acetylornithine aminotransferase n=3 Tax=Clostridium acetobutylicum RepID=ARGD_CLOAB (db=UNIREF evalue=1.8e-64 bit_score=252.3 identity=39.1 coverage=89.44844124700239)
seg (db=Seg db_id=seg from=257 to=264)
coiled-coil (db=Coil db_id=coil from=396 to=417 evalue=NA)
AMDSBA5_11_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14931..15374
-----------------
DNA (444bp)
protein (148aa)
cyclase/dehydrase
Cyclase/dehydrase n=2 Tax=Sulfobacillus acidophilus RepID=G8U1D5_9FIRM (db=UNIREF evalue=7.1e-48 bit_score=195.7 identity=66.0 coverage=95.94594594594594)
Bet v1-like (db=superfamily db_id=SSF55961 from=1 to=144 evalue=2.2e-31)
(db=HMMPfam db_id=PF03364 from=10 to=134 evalue=1.7e-24 interpro_id=IPR005031 interpro_description=Streptomyces cyclase/dehydrase)
AMDSBA5_11_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15710..16093
-----------------
DNA (384bp)
protein (128aa)
speD; S-adenosylmethionine decarboxylase
S-adenosylmethionine decarboxylase proenzyme n=2 Tax=Desulfosporosinus RepID=G6G9I4_9FIRM (db=UNIREF evalue=1.2e-43 bit_score=181.4 identity=72.0 coverage=91.40625)
SAM_DCase_Bsu: S-adenosylmethionine dec (db=HMMTigr db_id=TIGR03330 from=2 to=113 evalue=1.5e-65 interpro_id=IPR017716 interpro_description=S-adenosylmethionine decarboxylase proenzyme GO=Molecular Function: adenosylmethionine decarboxylase activity (GO:0004014), Biological Process: spermidine biosynthetic process (GO:0008295))
S-adenosylmethionine decarboxylase (db=superfamily db_id=SSF56276 from=2 to=118 evalue=5.9e-45 interpro_id=IPR016067 interpro_description=S-adenosylmethionine decarboxylase, core GO=Molecular Function: adenosylmethionine decarboxylase activity (GO:0004014), Biological Process: spermidine biosynthetic process (GO:0008295))
AMDSBA5_11_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16113..16526
-----------------
DNA (414bp)
protein (138aa)
nucleoside diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase n=84 Tax=Bacillus RepID=NDK_BACAN (db=UNIREF evalue=1.7e-43 bit_score=181.0 identity=60.6 coverage=98.55072463768117)
NDP_KINASES (db=PatternScan db_id=PS00469 from=112 to=120 evalue=0.0 interpro_id=IPR023005 interpro_description=Nucleoside diphosphate kinase, active site)
no description (db=HMMSmart db_id=SM00562 from=1 to=137 evalue=1.7e-79 interpro_id=IPR001564 interpro_description=Nucleoside diphosphate kinase GO=Molecular Function: nucleoside diphosphate kinase activity (GO:0004550), Molecular Function: ATP binding (GO:0005524), Biological Process: nucleoside diphosphate phosphorylation (GO:0006165), Biological Process: GTP biosynthetic process (GO:0006183), Biological Process: UTP biosynthetic process (GO:0006228), Biological Process: CTP biosynthetic process (GO:000624
AMDSBA5_11_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16532..17320
-----------------
DNA (789bp)
protein (263aa)
hypothetical protein
Conserved protein n=1 Tax=Methanosarcina mazei Go1 RepID=Q8PZF4_METMA (db=UNIREF evalue=2.8e-23 bit_score=114.8 identity=31.1 coverage=98.85931558935361)
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=21)
Metallo-dependent phosphatases (db=superfamily db_id=SSF56300 from=36 to=262 evalue=3.5e-27)
AMDSBA5_11_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17572..18369
-----------------
DNA (798bp)
protein (266aa)
methylthioadenosine phosphorylase (EC:2.4.2.28)
S-methyl-5'-thioadenosine phosphorylase n=7 Tax=Ajellomyces RepID=MTAP_AJECG (db=UNIREF evalue=8.3e-31 bit_score=139.8 identity=36.1 coverage=86.46616541353383)
MTAP: methylthioadenosine phosphorylase (db=HMMTigr db_id=TIGR01694 from=3 to=245 evalue=6.2e-106 interpro_id=IPR010044 interpro_description=Methylthioadenosine phosphorylase GO=Molecular Function: transferase activity, transferring pentosyl groups (GO:0016763))
Purine and uridine phosphorylases (db=superfamily db_id=SSF53167 from=1 to=261 evalue=2.4e-87)
AMDSBA5_11_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18403..19638
-----------------
DNA (1236bp)
protein (412aa)
adenosylhomocysteinase (EC:3.3.1.1)
adenosylhomocysteinase (EC:3.3.1.1)
Adenosylhomocysteinase n=1 Tax=Aquifex aeolicus VF5 RepID=SAHH_AQUAE (db=UNIREF evalue=1.3e-115 bit_score=422.2 identity=54.3 coverage=98.7864077669903)
AMDSBA5_11_19
unknown

Not on your lists

19687..19803
-----------------
DNA (117bp)
protein (39aa)
19687..19803 + ( gc_cont=0.547)
AMDSBA5_11_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19749..21113
-----------------
DNA (1365bp)
protein (455aa)
amidohydrolase
5-methylthioadenosine/S-adenosylhomocysteine deaminase n=1 Tax=Thermococcus sibiricus MM 739 RepID=MTAD_THESM (db=UNIREF evalue=1.9e-80 bit_score=305.4 identity=40.5 coverage=89.67032967032968)
seg (db=Seg db_id=seg from=179 to=184)
AMDSBA5_11_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21184..21594
-----------------
DNA (411bp)
protein (137aa)
Thioesterase/thiol ester dehydrase-isomerase (db=superfamily db_id=SSF54637 from=4 to=131 evalue=4.3e-20)
no description (db=Gene3D db_id=G3DSA:3.10.129.10 from=30 to=131 evalue=2.7e-11)
(db=HMMPfam db_id=PF03061 from=48 to=115 evalue=4.8e-09 interpro_id=IPR006683 interpro_description=Thioesterase superfamily)
thioesterase superfamily protein
AMDSBA5_11_22
Smithella sp. F21, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21591..22586
-----------------
DNA (996bp)
protein (332aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J5X7_DESRM (db=UNIREF evalue=3.1e-11 bit_score=75.1 identity=25.8 coverage=65.66265060240963)
Uncharacterized protein n=1 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8E155_9FIRM
AMDSBA5_11_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22583..22909)
-----------------
DNA (327bp)
protein (109aa)
hypothetical protein (db=KEGG evalue=8.4e-22 bit_score=108.2 identity=46.4 coverage=98.1651376146789)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U1C0_9FIRM (db=UNIREF evalue=1.1e-21 bit_score=108.2 identity=46.4 coverage=98.1651376146789)
AMDSBA5_11_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23026..25752
-----------------
DNA (2727bp)
protein (909aa)
Exonuclease RNase T and DNA polymerase III
Exonuclease RNase T and DNA polymerase III
Exonuclease RNase T and DNA polymerase III n=2 Tax=Sulfobacillus acidophilus RepID=G8U1B9_9FIRM (db=UNIREF evalue=1.5e-212 bit_score=745.3 identity=46.2 coverage=95.15951595159517)
AMDSBA5_11_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25721..26503
-----------------
DNA (783bp)
protein (261aa)
surE; stationary-phase survival protein SurE
5'-nucleotidase SurE n=2 Tax=Acaryochloris RepID=SURE_ACAM1 (db=UNIREF evalue=1.7e-44 bit_score=185.3 identity=42.9 coverage=92.72030651340997)
surE: 5'/3'-nucleotidase SurE (db=HMMTigr db_id=TIGR00087 from=4 to=241 evalue=2.6e-74 interpro_id=IPR002828 interpro_description=Survival protein SurE-like phosphatase/nucleotidase GO=Molecular Function: hydrolase activity (GO:0016787))
SurE-like (db=superfamily db_id=SSF64167 from=4 to=255 evalue=1.6e-73 interpro_id=IPR002828 interpro_description=Survival protein SurE-like phosphatase/nucleotidase GO=Molecular Function: hydrolase activity (GO:0016787))
AMDSBA5_11_26
unknown

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comp(26493..26981)
-----------------
DNA (489bp)
protein (163aa)
26493..26981 - ( gc_cont=0.495)
AMDSBA5_11_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27380..27601
-----------------
DNA (222bp)
protein (74aa)
small acid-soluble spore protein alpha/beta type
SASP_1 (db=PatternScan db_id=PS00304 from=23 to=32 evalue=0.0 interpro_id=IPR018126 interpro_description=Small acid-soluble spore protein, alpha/beta-type, conserved site GO=Molecular Function: double-stranded DNA binding (GO:0003690), Biological Process: DNA topological change (GO:0006265))
(db=HMMPfam db_id=PF00269 from=8 to=68 evalue=3.5e-22 interpro_id=IPR001448 interpro_description=Small acid-soluble spore protein, alpha/beta-type GO=Molecular Function: double-stranded DNA binding (GO:0003690), Biological Process: DNA topological change (GO:0006265))
Small acid-soluble spore protein alpha/beta type n=2 Tax=Sulfobacillus acidophilus RepID=F8I6P4_SULAT
AMDSBA5_11_28
Brevibacillus panacihumi, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

27747..28544
-----------------
DNA (798bp)
protein (266aa)
transposase
Putative uncharacterized protein n=1 Tax=Bacillus smithii 7_3_47FAA RepID=G9QK24_9BACI (db=UNIREF evalue=1.1e-51 bit_score=209.1 identity=45.6 coverage=80.82706766917293)
coiled-coil (db=Coil db_id=coil from=190 to=221 evalue=NA)
seg (db=Seg db_id=seg from=232 to=246)
AMDSBA5_11_29
Paenibacillus sp. FSL R7-269, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28603..29184
-----------------
DNA (582bp)
protein (194aa)
transposase
Transposase IS4 family protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I837_SULAT (db=UNIREF evalue=1.2e-60 bit_score=238.4 identity=70.2 coverage=82.9896907216495)
(db=HMMPfam db_id=PF01609 from=35 to=126 evalue=3.6e-08 interpro_id=IPR002559 interpro_description=Transposase, IS4-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
AMDSBA5_11_30
Geobacillus sp. A8, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

29296..29499
-----------------
DNA (204bp)
protein (68aa)
transposase
seg (db=Seg db_id=seg from=19 to=27)
seg (db=Seg db_id=seg from=45 to=56)
Transposase IS4 family protein (Fragment) n=1 Tax=Anoxybacillus flavithermus AK1 RepID=M8D211_9BACI
Displaying items 1-30 of 107 in total

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