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AMDSBA5_31

Alias: AMDSBA5_C30

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA5_31_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

176..1423
-----------------
DNA (1248bp)
protein (416aa)
ROK family protein
ROK family protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7M4A4_9CLOT (db=UNIREF evalue=3.1e-24 bit_score=118.6 identity=25.1 coverage=86.77884615384616)
ROK FAMILY (db=HMMPanther db_id=PTHR18964 from=152 to=390 evalue=4.8e-52)
XYLOSE REPRESSOR (db=HMMPanther db_id=PTHR18964:SF27 from=152 to=390 evalue=4.8e-52)
AMDSBA5_31_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1420..2250)
-----------------
DNA (831bp)
protein (277aa)
hypothetical protein rbh
hypothetical protein rbh
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSE9_9FIRM (db=UNIREF evalue=1.9e-102 bit_score=377.9 identity=65.6 coverage=97.11191335740072)
AMDSBA5_31_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2289..3167)
-----------------
DNA (879bp)
protein (293aa)
dipeptide ABC superfamily ATP binding cassette transporter membrane protein
PUTATIVE ABC TRANSPORTER PERMEASE PROTEIN OLIGOPEPTIDE n=1 Tax=Mesorhizobium loti RepID=Q8KJ80_RHILI (db=UNIREF evalue=1.1e-47 bit_score=196.1 identity=38.6 coverage=88.05460750853243)
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=54)
transmembrane_regions (db=TMHMM db_id=tmhmm from=100 to=122)
AMDSBA5_31_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3206..4150)
-----------------
DNA (945bp)
protein (315aa)
binding-protein-dependent transport system inner membrane protein
ABC-type dipeptide/oligopeptide/nickel transport systems, permease protein n=2 Tax=Haloferax RepID=I3R271_HALME (db=UNIREF evalue=6.7e-64 bit_score=250.0 identity=39.6 coverage=97.77777777777777)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=99 to=121)
AMDSBA5_31_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4160..4465)
-----------------
DNA (306bp)
protein (102aa)
family 5 extracellular solute-binding protein
ABC-transport protein, solute-binding component n=7 Tax=Enterobacter RepID=D2ZFQ5_9ENTR (db=UNIREF evalue=1.3e-13 bit_score=81.3 identity=38.4 coverage=96.07843137254902)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=1 to=100 evalue=3.4e-22)
no description (db=Gene3D db_id=G3DSA:3.10.105.10 from=1 to=71 evalue=2.4e-11)
AMDSBA5_31_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4501..5727)
-----------------
DNA (1227bp)
protein (409aa)
Extracellular solute-binding protein, family 5 n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FMP5_METHJ (db=UNIREF evalue=4.7e-25 bit_score=121.3 identity=26.5 coverage=85.57457212713936)
seg (db=Seg db_id=seg from=24 to=47)
seg (db=Seg db_id=seg from=271 to=279)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=41 to=408 evalue=3.5e-100)
AMDSBA5_31_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5761..6474)
-----------------
DNA (714bp)
protein (238aa)
GntR family transcriptional regulator
Transcriptional regulator, GntR family n=1 Tax=Modestobacter marinus RepID=I4EXZ6_9ACTO (db=UNIREF evalue=2.3e-16 bit_score=91.7 identity=39.3 coverage=78.15126050420169)
seg (db=Seg db_id=seg from=7 to=20)
(db=HMMPfam db_id=PF07729 from=100 to=222 evalue=1.3e-22 interpro_id=IPR011711 interpro_description=GntR, C-terminal)
AMDSBA5_31_8
Desulfosporosinus acidiphilus, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6584..7492)
-----------------
DNA (909bp)
protein (303aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=38 to=60)
transmembrane_regions (db=TMHMM db_id=tmhmm from=67 to=89)
transmembrane_regions (db=TMHMM db_id=tmhmm from=94 to=116)
AMDSBA5_31_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7650..8417)
-----------------
DNA (768bp)
protein (256aa)
protein YbgL
UPF0271 protein CKR_2481 n=2 Tax=Clostridium kluyveri RepID=Y2481_CLOK1 (db=UNIREF evalue=4.2e-56 bit_score=223.8 identity=46.0 coverage=97.265625)
seg (db=Seg db_id=seg from=124 to=135)
Glycoside hydrolase/deacetylase (db=superfamily db_id=SSF88713 from=2 to=254 evalue=5.3e-98 interpro_id=IPR011330 interpro_description=Glycoside hydrolase/deacetylase, beta/alpha-barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: carbohydrate metabolic process (GO:0005975))
AMDSBA5_31_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8423..9454)
-----------------
DNA (1032bp)
protein (344aa)
Acetamidase/Formamidase rbh
Probable amidase n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9DW17_9RHOB (db=UNIREF evalue=1.9e-11 bit_score=75.9 identity=33.1 coverage=39.53488372093023)
Acetamidase/Formamidase-like (db=superfamily db_id=SSF141130 from=5 to=338 evalue=3.2e-73)
(db=HMMPfam db_id=PF03069 from=190 to=257 evalue=1.6e-16 interpro_id=IPR004304 interpro_description=Acetamidase/Formamidase GO=Biological Process: metabolic process (GO:0008152), Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides (GO:0016811))
AMDSBA5_31_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10133..11545
-----------------
DNA (1413bp)
protein (471aa)
seg (db=Seg db_id=seg from=436 to=458)
seg (db=Seg db_id=seg from=28 to=41)
seg (db=Seg db_id=seg from=9 to=19)
Quinoprotein alcohol dehydrogenase-like (db=superfamily db_id=SSF50998 from=208 to=467 evalue=4.4e-30 interpro_id=IPR011047 interpro_description=Quinonprotein alcohol dehydrogenase-like)
AMDSBA5_31_12
Thermoplasmatales archaeon I-plasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

11785..13032
-----------------
DNA (1248bp)
protein (416aa)
sqrE; Sulfide:quinone oxidoreductase SqrE
Sulfide:quinone oxidoreductase SqrE n=1 Tax=Ignavibacterium album JCM 16511 RepID=I0AFX7_IGNAJ (db=UNIREF evalue=6.3e-110 bit_score=403.3 identity=49.6 coverage=96.39423076923077)
no description (db=Gene3D db_id=G3DSA:3.50.50.60 from=5 to=332 evalue=5.8e-35)
FAD/NAD(P)-binding domain (db=superfamily db_id=SSF51905 from=7 to=332 evalue=3.1e-30)
AMDSBA5_31_13
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13071..14846)
-----------------
DNA (1776bp)
protein (592aa)
cysteine ABC transporter permease/ATP-binding protein CydC (EC:3.6.3.44)
ABC transporter, ATP-binding protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9R4G9_9RHOB (db=UNIREF evalue=2.0e-13 bit_score=83.2 identity=29.5 coverage=40.03378378378378)
seg (db=Seg db_id=seg from=269 to=284)
seg (db=Seg db_id=seg from=156 to=171)
AMDSBA5_31_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14812..16578)
-----------------
DNA (1767bp)
protein (589aa)
cysteine ABC transporter ATP-binding protein/permease (EC:3.6.3.44)
Probable multidrug resistance-associated protein lethal(2)03659 n=1 Tax=Harpegnathos saltator RepID=E2B3S7_HARSA (db=UNIREF evalue=1.3e-39 bit_score=170.2 identity=28.6 coverage=84.04074702886248)
seg (db=Seg db_id=seg from=201 to=212)
seg (db=Seg db_id=seg from=14 to=31)
AMDSBA5_31_15
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16579..17589)
-----------------
DNA (1011bp)
protein (337aa)
cytochrome d ubiquinol oxidase subunit II
Cytochrome bd ubiquinol oxidase, subunit II n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AF91_9ACTN (db=UNIREF evalue=7.0e-59 bit_score=233.4 identity=37.3 coverage=96.73590504451039)
seg (db=Seg db_id=seg from=227 to=242)
seg (db=Seg db_id=seg from=84 to=94)
AMDSBA5_31_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17652..19064)
-----------------
DNA (1413bp)
protein (471aa)
cydA; cytochrome bd ubiquinol oxidase subunit I
Cytochrome d ubiquinol oxidase, subunit I n=9 Tax=Lactobacillus reuteri RepID=C0YWT5_LACRE (db=UNIREF evalue=5.1e-116 bit_score=423.7 identity=45.1 coverage=97.87685774946921)
transmembrane_regions (db=TMHMM db_id=tmhmm from=362 to=384)
transmembrane_regions (db=TMHMM db_id=tmhmm from=415 to=437)
AMDSBA5_31_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19309..20211)
-----------------
DNA (903bp)
protein (301aa)
diacylglycerol kinase catalytic subunit
Diacylglycerol kinase catalytic region n=1 Tax=Herpetosiphon aurantiacus DSM 785 RepID=A9B5F5_HERA2 (db=UNIREF evalue=8.5e-16 bit_score=90.1 identity=25.8 coverage=94.35215946843853)
SPHINGOSINE KINASE (db=HMMPanther db_id=PTHR12358 from=2 to=257 evalue=7.2e-22)
BMRU PROTEIN (db=HMMPanther db_id=PTHR12358:SF4 from=2 to=257 evalue=7.2e-22)
AMDSBA5_31_18
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

20678..21391
-----------------
DNA (714bp)
protein (238aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=2 Tax=Nitrosomonas RepID=HIS4_NITEU (db=UNIREF evalue=3.6e-09 bit_score=67.8 identity=24.1 coverage=93.27731092436974)
Ribulose-phoshate binding barrel (db=superfamily db_id=SSF51366 from=7 to=229 evalue=5.5e-24 interpro_id=IPR011060 interpro_description=Ribulose-phosphate binding barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
(db=HMMPfam db_id=PF00977 from=9 to=219 evalue=2.1e-20 interpro_id=IPR006062 interpro_description=Histidine biosynthesis GO=Biological Process: histidine biosynthetic process (GO:0000105))
AMDSBA5_31_19
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21991..22650
-----------------
DNA (660bp)
protein (220aa)
folE; GTP cyclohydrolase I
GTP cyclohydrolase 1 n=2 Tax=Sulfobacillus acidophilus RepID=G8TZP0_9FIRM (db=UNIREF evalue=4.5e-67 bit_score=260.0 identity=66.3 coverage=85.45454545454545)
GTP_CYCLOHYDROL_1_2 (db=PatternScan db_id=PS00860 from=145 to=155 evalue=0.0 interpro_id=IPR018234 interpro_description=GTP cyclohydrolase I, conserved site GO=Molecular Function: GTP cyclohydrolase I activity (GO:0003934), Cellular Component: cytoplasm (GO:0005737), Biological Process: tetrahydrofolate biosynthetic process (GO:0046654))
GTP_CYCLOHYDROL_1_1 (db=PatternScan db_id=PS00859 from=96 to=112 evalue=0.0 interpro_id=IPR018234 interpro_description=GTP cyclohydrolase I, conserved site GO=Molecular Function: GTP cyclohydrolase I activity (GO:0003934), Cellular Component: cytoplasm (GO:0005737), Biological Process: tetrahydrofolate biosynthetic process (GO:0046654))
AMDSBA5_31_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22789..25407
-----------------
DNA (2619bp)
protein (873aa)
ppc; phosphoenolpyruvate carboxylase
ppc; phosphoenolpyruvate carboxylase
Phosphoenolpyruvate carboxylase n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZCV7_9PROT (db=UNIREF evalue=2.6e-126 bit_score=458.8 identity=33.4 coverage=98.3963344788087)
AMDSBA5_31_21
unknown

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comp(25320..25745)
-----------------
DNA (426bp)
protein (142aa)
25320..25745 - ( gc_cont=0.585)
Displaying 21 items

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