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AMDSBA5_3_25 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
RNA polymerase factor sigma-70 (EC:2.7.7.6) similarity KEGG
DB: KEGG
42.4 191.0 153 5.40e-35 tap:GZ22_17710
RNA polymerase sigma-H factor n=3 Tax=Bacillus megaterium RepID=G2RL08_BACME (db=UNIREF evalue=3.9e-31 bit_score=140.6 identity=39.8 coverage=89.2018779342723) similarity UNIREF
DB: UNIREF
39.8 89.2 140 3.90e-31 tap:GZ22_17710
coiled-coil (db=Coil db_id=coil from=191 to=212 evalue=NA) iprscan interpro
DB: Coil
null null null null tap:GZ22_17710
HTH_LUXR_1 (db=PatternScan db_id=PS00622 from=177 to=204 evalue=0.0 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565)) iprscan interpro
DB: PatternScan
null null null 0.0 tap:GZ22_17710
RNA polymerase sigma-H factor (db=HMMPIR db_id=PIRSF002939 from=6 to=212 evalue=3.0e-56 interpro_id=IPR016371 interpro_description=RNA polymerase sigma-H factor GO=Molecular Function: DNA binding (GO:0003677), Biological Process: transcription, DNA-dependent (GO:0006351), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPIR
null null null 3.00e-56 tap:GZ22_17710
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=31 to=209 evalue=2.2e-28 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 iprscan interpro
DB: HMMTigr
null null null 2.20e-28 tap:GZ22_17710
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=17 to=106 evalue=4.9e-17 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fact iprscan interpro
DB: superfamily
null null null 4.90e-17 tap:GZ22_17710
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=120 to=211 evalue=5.8e-13 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct iprscan interpro
DB: superfamily
null null null 5.80e-13 tap:GZ22_17710
(db=HMMPfam db_id=PF04542 from=36 to=105 evalue=2.8e-12 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 2.80e-12 tap:GZ22_17710
(db=HMMPfam db_id=PF08281 from=154 to=205 evalue=1.9e-09 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 1.90e-09 tap:GZ22_17710
no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=35 to=105 evalue=1.4e-06) iprscan interpro
DB: Gene3D
null null null 1.40e-06 tap:GZ22_17710
RNA polymerase factor sigma-70 {ECO:0000313|EMBL:AIF68286.1}; EC=2.7.7.6 {ECO:0000313|EMBL:AIF68286.1};; TaxID=586416 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Terribacillus.;" UNIPROT
DB: UniProtKB
42.4 191.0 153 2.70e-34 A0A075LQ80_9BACI
Transcriptional regulator, LuxR family n=1 Tax=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) RepID=C4KZR3_EXISA similarity UNIREF
DB: UNIREF90
38.6 null 151 2.30e-34 tap:GZ22_17710