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AMDSBA5_3

Alias: AMDSBA5_C2

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Displaying items 1-30 of 145 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA5_3_1
unknown

Not on your lists

2..214
DNA (213bp) protein (71aa)
2..214 + ( gc_cont=0.404)
AMDSBA5_3_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

251..1936
DNA (1686bp) protein (562aa)
ErfK/YbiS/YcfS/YnhG family protein
Putative uncharacterized protein n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DME1_9BACL (db=UNIREF evalue=4.7e-44 bit_score=184.9 identity=43.5 coverage=40.0355871886121)
seg (db=Seg db_id=seg from=546 to=561)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=50)
AMDSBA5_3_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2080..2775
DNA (696bp) protein (232aa)
seg (db=Seg db_id=seg from=7 to=21)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=1 to=206 evalue=8.6e-25)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=25 to=215 evalue=1.6e-18)
(db=HMMPfam db_id=PF01209 from=25 to=160 evalue=1.4e-14 interpro_id=IPR004033 interpro_description=UbiE/COQ5 methyltransferase GO=Molecular Function: methyltransferase activity (GO:0008168))
AMDSBA5_3_4
unknown

Not on your lists

2996..3289
DNA (294bp) protein (98aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
(db=HMMPfam db_id=PF09851 from=26 to=89 evalue=8.6e-10 interpro_id=IPR018649 interpro_description=Protein of unknown function DUF2078, membrane)
AMDSBA5_3_5
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3371..3955
DNA (585bp) protein (195aa)
ermC; type 11 methyltransferase
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=1 to=192 evalue=2.0e-40)
METHYLTRANSFERASE (db=HMMPanther db_id=PTHR10108 from=28 to=179 evalue=4.1e-39)
2-HEPTAPRENYL-1,4-NAPHTHOQUINONE METHYLTRANSFERASE (db=HMMPanther db_id=PTHR10108:SF15 from=28 to=179 evalue=4.1e-39)
AMDSBA5_3_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3976..4923)
DNA (948bp) protein (316aa)
prkB; phosphoribulokinase
Phosphoribulokinase, chloroplastic n=6 Tax=Magnoliophyta RepID=KPPR_ARATH (db=UNIREF evalue=2.4e-37 bit_score=161.8 identity=35.7 coverage=71.51898734177216)
PHOSPHORIBULOSE KINASE (db=HMMPanther db_id=PTHR10285:SF5 from=16 to=193 evalue=1.1e-71)
URIDINE KINASE RELATED (db=HMMPanther db_id=PTHR10285 from=16 to=193 evalue=1.1e-71)
AMDSBA5_3_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4999..5853)
DNA (855bp) protein (285aa)
fructose-bisphosphate aldolase (EC:4.1.2.13)
fructose-bisphosphate aldolase (EC:4.1.2.13)
Putative fructose-1,6-bisphosphate aldolase n=1 Tax=Treponema phagedenis F0421 RepID=E7NT23_TREPH (db=UNIREF evalue=5.0e-42 bit_score=177.2 identity=41.6 coverage=82.45614035087719)
seg (db=Seg db_id=seg from=33 to=46)
AMDSBA5_3_8
unknown

Not on your lists

comp(6120..6608)
DNA (489bp) protein (163aa)
6120..6608 - ( gc_cont=0.462)
AMDSBA5_3_9
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6958..8121
DNA (1164bp) protein (388aa)
purT; phosphoribosylglycinamide formyltransferase
Phosphoribosylglycinamide formyltransferase 2 n=1 Tax=Patulibacter sp. I11 RepID=H0E1H0_9ACTN (db=UNIREF evalue=6.5e-109 bit_score=399.8 identity=55.2 coverage=98.71134020618557)
seg (db=Seg db_id=seg from=7 to=21)
AMDSBA5_3_10
Thermoplasmatales archaeon A-plasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

comp(8236..9153)
DNA (918bp) protein (306aa)
ureidoglycolate lyase (EC:4.3.2.3)
Putative uncharacterized protein n=1 Tax=Anopheles darlingi RepID=E3XD43_ANODA (db=UNIREF evalue=1.1e-39 bit_score=169.5 identity=37.4 coverage=76.47058823529412)
FUMARYLACETOACETATE HYDROLASE DOMAIN CONTAINING 2 (db=HMMPanther db_id=PTHR11820:SF6 from=84 to=302 evalue=4.2e-88)
FUMARYLACETOACETATE HYDROLASE (db=HMMPanther db_id=PTHR11820 from=84 to=302 evalue=4.2e-88)
AMDSBA5_3_11
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9194..9814)
DNA (621bp) protein (207aa)
RNA polymerase sigma-30 subunit SigH
RNA polymerase sigma-H factor n=29 Tax=Bacillus RepID=RPSH_BACLI (db=UNIREF evalue=3.9e-36 bit_score=157.1 identity=41.4 coverage=91.78743961352657)
seg (db=Seg db_id=seg from=149 to=161)
HTH_LUXR_1 (db=PatternScan db_id=PS00622 from=172 to=199 evalue=0.0 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
AMDSBA5_3_12
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

10026..10232
DNA (207bp) protein (69aa)
MONODEHYDROASCORBATE REDUCTASE (NADH) (db=HMMPanther db_id=PTHR22912:SF31 from=7 to=51 evalue=2.1e-07)
seg (db=Seg db_id=seg from=9 to=21)
FAD/NAD(P)-binding domain (db=superfamily db_id=SSF51905 from=1 to=53 evalue=2.6e-08)
DISULFIDE OXIDOREDUCTASE (db=HMMPanther db_id=PTHR22912 from=7 to=51 evalue=2.1e-07)
AMDSBA5_3_13
uncultured gamma proteobacterium, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10181..11215
DNA (1035bp) protein (345aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Meiothermus silvanus DSM 9946 RepID=D7BCW9_MEISD (db=UNIREF evalue=2.1e-79 bit_score=301.6 identity=45.9 coverage=97.3913043478261)
MONODEHYDROASCORBATE REDUCTASE (NADH) (db=HMMPanther db_id=PTHR22912:SF31 from=22 to=344 evalue=1.6e-72)
AMDSBA5_3_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11274..12368)
DNA (1095bp) protein (365aa)
HtrA2 peptidase
Periplasmic serine peptidase DegS n=1 Tax=Alishewanella jeotgali KCTC 22429 RepID=H3ZD30_9ALTE (db=UNIREF evalue=5.3e-36 bit_score=157.5 identity=33.2 coverage=86.84931506849315)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
SERINE PROTEASE DO/HTRA-RELATED (db=HMMPanther db_id=PTHR22939:SF10 from=59 to=354 evalue=2.1e-101)
AMDSBA5_3_15
Sulfolobus islandicus, Sulfolobus, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(12445..13041)
DNA (597bp) protein (199aa)
Multimeric flavodoxin WrbA
NADPH-dependent FMN reductase n=1 Tax=Metallosphaera cuprina Ar-4 RepID=F4FZZ9_METCR (db=UNIREF evalue=2.0e-53 bit_score=214.5 identity=55.4 coverage=95.47738693467338)
seg (db=Seg db_id=seg from=155 to=160)
seg (db=Seg db_id=seg from=103 to=124)
AMDSBA5_3_16
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13235..13843
DNA (609bp) protein (203aa)
RNA polymerase ECF-type sigma factor
ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GBY9_SORC5 (db=UNIREF evalue=5.0e-12 bit_score=77.0 identity=27.0 coverage=78.81773399014779)
seg (db=Seg db_id=seg from=167 to=184)
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=21 to=179 evalue=2.8e-38 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169
AMDSBA5_3_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14069..14335)
DNA (267bp) protein (89aa)
regulatory protein GntR HTH
Uncharacterized protein {ECO:0000313|EMBL:AEJ41409.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I8W2_SULAT
AMDSBA5_3_18
unknown

Not on your lists

14539..15204
DNA (666bp) protein (222aa)
seg (db=Seg db_id=seg from=115 to=131)
transmembrane_regions (db=TMHMM db_id=tmhmm from=185 to=207)
transmembrane_regions (db=TMHMM db_id=tmhmm from=106 to=128)
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=58)
AMDSBA5_3_19
unknown

Not on your lists

comp(15174..15461)
DNA (288bp) protein (96aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=50)
transmembrane_regions (db=TMHMM db_id=tmhmm from=54 to=76)
seg (db=Seg db_id=seg from=56 to=76)
AMDSBA5_3_20
Paenibacillus sp. JDR-2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15587..17104
DNA (1518bp) protein (506aa)
Ppx/GppA phosphatase
Exopolyphosphatase n=1 Tax=Enterococcus italicus DSM 15952 RepID=E6LHT6_9ENTE (db=UNIREF evalue=2.1e-59 bit_score=235.7 identity=31.7 coverage=90.31620553359684)
(db=HMMPfam db_id=PF02541 from=24 to=297 evalue=1.5e-50 interpro_id=IPR003695 interpro_description=Ppx/GppA phosphatase)
no description (db=Gene3D db_id=G3DSA:3.30.420.150 from=131 to=302 evalue=3.8e-33)
AMDSBA5_3_21
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

17327..18043
DNA (717bp) protein (239aa)
thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase 3 n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HZ31_9BACT (db=UNIREF evalue=5.5e-42 bit_score=176.8 identity=44.9 coverage=88.70292887029288)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=2 to=217 evalue=5.9e-33)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=8 to=205 evalue=4.2e-31)
AMDSBA5_3_22
GWF2_Melainabacteria_37_15_curated, Melainabacteria, Bacteria

Not on your lists

18102..18791
DNA (690bp) protein (230aa)
thymidylate kinase
Thymidylate kinase 3 n=1 Tax=Caldicellulosiruptor hydrothermalis 108 RepID=E4Q964_CALH1 (db=UNIREF evalue=1.1e-12 bit_score=79.3 identity=30.5 coverage=80.0)
seg (db=Seg db_id=seg from=17 to=33)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=19 to=225 evalue=1.1e-17)
AMDSBA5_3_23
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18809..19348
DNA (540bp) protein (180aa)
exopolyphosphatase
Ppx/GppA phosphatase n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FS23_METHJ (db=UNIREF evalue=1.1e-10 bit_score=72.4 identity=30.0 coverage=93.88888888888889)
HD-domain/PDEase-like (db=superfamily db_id=SSF109604 from=1 to=176 evalue=3.4e-24)
(db=HMMPfam db_id=PF01966 from=10 to=126 evalue=5.6e-07 interpro_id=IPR006674 interpro_description=Metal-dependent phosphohydrolase, HD subdomain GO=Molecular Function: phosphoric diester hydrolase activity (GO:0008081), Molecular Function: metal ion binding (GO:0046872))
AMDSBA5_3_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19390..20799)
DNA (1410bp) protein (470aa)
sfcA; malate dehydrogenase
sfcA; malate dehydrogenase
Malate dehydrogenase (Oxaloacetate-decarboxylating) n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LVF9_ACIC1 (db=UNIREF evalue=6.9e-105 bit_score=386.7 identity=49.4 coverage=87.87234042553192)
AMDSBA5_3_25
Terribacillus aidingensis, Terribacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21051..21689
DNA (639bp) protein (213aa)
RNA polymerase factor sigma-70 (EC:2.7.7.6)
RNA polymerase sigma-H factor n=3 Tax=Bacillus megaterium RepID=G2RL08_BACME (db=UNIREF evalue=3.9e-31 bit_score=140.6 identity=39.8 coverage=89.2018779342723)
coiled-coil (db=Coil db_id=coil from=191 to=212 evalue=NA)
HTH_LUXR_1 (db=PatternScan db_id=PS00622 from=177 to=204 evalue=0.0 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
AMDSBA5_3_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21686..22696)
DNA (1011bp) protein (337aa)
cytochrome oxidase assembly rbh
cytochrome oxidase assembly rbh
Cytochrome oxidase assembly n=2 Tax=Sulfobacillus acidophilus RepID=G8U181_9FIRM (db=UNIREF evalue=1.4e-83 bit_score=315.5 identity=51.4 coverage=92.87833827893175)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
AMDSBA5_3_27
Komagataeibacter intermedius, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23037..23603
DNA (567bp) protein (189aa)
seg (db=Seg db_id=seg from=154 to=167)
Isochorismatase-like hydrolases (db=superfamily db_id=SSF52499 from=1 to=183 evalue=1.3e-42 interpro_id=IPR000868 interpro_description=Isochorismatase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
no description (db=Gene3D db_id=G3DSA:3.40.50.850 from=7 to=183 evalue=3.7e-42 interpro_id=IPR000868 interpro_description=Isochorismatase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
(db=HMMPfam db_id=PF00857 from=9 to=181 evalue=8.4e-39 interpro_id=IPR000868 interpro_description=Isochorismatase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
AMDSBA5_3_28
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23648..25609)
DNA (1962bp) protein (654aa)
acetoacetyl-CoA synthase
acetoacetyl-CoA synthase
Acetoacetate--CoA ligase n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=E2SC87_9ACTO (db=UNIREF evalue=2.8e-173 bit_score=614.4 identity=47.6 coverage=97.55351681957187)
AMDSBA5_3_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26077..26982
DNA (906bp) protein (302aa)
hypothetical protein
Transporter, drug/metabolite exporter family protein n=3 Tax=Bacillaceae RepID=A3I9T2_9BACI (db=UNIREF evalue=2.2e-32 bit_score=145.2 identity=29.2 coverage=95.69536423841059)
transmembrane_regions (db=TMHMM db_id=tmhmm from=139 to=161)
seg (db=Seg db_id=seg from=72 to=83)
AMDSBA5_3_30
GWB2_Chloroflexi_54_36_curated, Chloroflexi, Bacteria

Not on your lists

comp(27035..27778)
DNA (744bp) protein (248aa)
short-chain alcohol dehydrogenase family enzyme
Short-chain dehydrogenase/reductase SDR n=1 Tax=Lysinibacillus fusiformis ZC1 RepID=D7WTY6_9BACI (db=UNIREF evalue=3.3e-13 bit_score=81.3 identity=27.8 coverage=80.24193548387096)
SHORT-CHAIN DEHYDROGENASE-RELATED (db=HMMPanther db_id=PTHR19410:SF46 from=1 to=182 evalue=2.6e-49)
SHORT-CHAIN DEHYDROGENASES/REDUCTASE FAMILY MEMBER (db=HMMPanther db_id=PTHR19410 from=1 to=182 evalue=2.6e-49)
Displaying items 1-30 of 145 in total

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