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AMDSBA5_3_16 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
34.5 206.0 117 4.10e-24 sth:STH2962
ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GBY9_SORC5 (db=UNIREF evalue=5.0e-12 bit_score=77.0 identity=27.0 coverage=78.81773399014779) similarity UNIREF
DB: UNIREF
27.0 78.82 77 5.00e-12 sth:STH2962
seg (db=Seg db_id=seg from=167 to=184) iprscan interpro
DB: Seg
null null null null sth:STH2962
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=21 to=179 evalue=2.8e-38 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 iprscan interpro
DB: HMMTigr
null null null 2.80e-38 sth:STH2962
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=11 to=113 evalue=1.7e-20 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fact iprscan interpro
DB: superfamily
null null null 1.70e-20 sth:STH2962
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=20 to=93 evalue=1.9e-17) iprscan interpro
DB: Gene3D
null null null 1.90e-17 sth:STH2962
(db=HMMPfam db_id=PF04542 from=26 to=93 evalue=8.9e-17 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 8.90e-17 sth:STH2962
(db=HMMPfam db_id=PF08281 from=123 to=175 evalue=6.2e-14 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 6.20e-14 sth:STH2962
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=111 to=181 evalue=9.5e-14 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct iprscan interpro
DB: superfamily
null null null 9.50e-14 sth:STH2962
RNA polymerase ECF-type sigma factor n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67K53_SYMTH similarity UNIREF
DB: UNIREF90
34.5 null 117 5.90e-24 sth:STH2962
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:BAD41945.1}; TaxID=292459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacteriu UNIPROT
DB: UniProtKB
34.5 206.0 117 2.00e-23 Q67K53_SYMTH