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SCNpilot_expt_1000_bf_scaffold_234_2

Organism: SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: comp(1150..1662)

Top 3 Functional Annotations

Value Algorithm Source
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HU61_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 94.5
  • Coverage: 128.0
  • Bit_score: 247
  • Evalue 1.00e-62
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:KFG89072.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.9
  • Coverage: 135.0
  • Bit_score: 255
  • Evalue 5.30e-65
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 44.8
  • Coverage: 165.0
  • Bit_score: 144
  • Evalue 3.80e-32

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Taxonomy

Sphingobium herbicidovorans → Sphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 513
ATGACCCCCTCCCGTTCTACGGCAGCCTTCGAGGCGCTTTACCGGACAGAATATGCGCGGGTTCTGCGTTTCTTCCGAAAGAGGGTGGGCGGAGACGATGCTCCCGACCTCGCGCAGGAGGTTTTCGTGAAGCTGTTCGCTGCGGGAGTTGTCGAACAAATCGAGAATCCGCCAGCCTATCTCACCCGATGCGCGCGCAACCTTCTTATCAGCCACGCGCGTCGCAGGGCGTCGGCACACATCGTCACCTGTCCGATCGACGAGGGTCGGGATGCACCGGCGCCTCCCGAGCAAACGTGGGGAATTGAGGAGGGAGACATCCGGAGGGTTTATCGGCGGACACTGCTGGCCATGCCGCGCAAGACCCGCCGCATCTTCCTGATGCACCGGCTGAAATGCATGACCTATGCGGAGATCTCCGAGCAGGTCGGCATCGGCTACGCTGGCGTCGAATATCATATGACGCGTGCCCTGGCGCGGTGCCGCAGAACGGCTTCTGTGCATCGATTGTAG
PROTEIN sequence
Length: 171
MTPSRSTAAFEALYRTEYARVLRFFRKRVGGDDAPDLAQEVFVKLFAAGVVEQIENPPAYLTRCARNLLISHARRRASAHIVTCPIDEGRDAPAPPEQTWGIEEGDIRRVYRRTLLAMPRKTRRIFLMHRLKCMTYAEISEQVGIGYAGVEYHMTRALARCRRTASVHRL*