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SCNpilot_expt_1000_bf_scaffold_576_8

Organism: SCNpilot_P_inoc_Microbacterium_69_20

near complete RP 47 / 55 BSCG 44 / 51 ASCG 11 / 38
Location: 5775..6452

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor n=2 Tax=Microbacterium RepID=H8E1N6_9MICO similarity UNIREF
DB: UNIREF100
  • Identity: 81.9
  • Coverage: 243.0
  • Bit_score: 388
  • Evalue 6.40e-105
  • rbh
TIGR02947 family RNA polymerase sigma-70 factor {ECO:0000313|EMBL:EPD86691.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.9
  • Coverage: 243.0
  • Bit_score: 388
  • Evalue 9.00e-105
sigH; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 81.7
  • Coverage: 218.0
  • Bit_score: 356
  • Evalue 6.50e-96

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Taxonomy

Microbacterium sp. oral taxon 186 → Microbacterium → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 678
GTGACAGCGACACTCGCCCCCGTTCCCGCGGACCTCTCAGAAGTAGACTGGGCCGCGATGGAAGAGCAGGCGGCCGCAGAGCCGCAGACCACGCAGGATCCGCGCGTCCAGTTCGAGCAGCAGGCGTTGCCGTTCATGGACCAGCTGTACGCCGCCGCGATGCGGATGACCCGCAACCCGGCCGATGCCGCCGACCTCGTGCAGGAGACCTTCGTGAAGGCGTTCGCCTCGTGGGCATCCTTCACCCAGGGCACGAACCTCAAGGCGTGGCTGTACCGGATTCTGACCAACACGTACATCAACACGTATCGCAAGAAGCAGCGTGAGCCCTACCAGGGCACGATCGACGACCTCGAGGACTGGCAGCTCGGCGGCGCCGAGTCGACGACCGCGACGAGCACCCGCTCGGCCGAAGCCGAAGCGATCGACCACATGCCGGCATCCGTCGTCAAGGATGCCCTGCAGTCGCTGCCCGAGGACTTCCGCCTCGCGGTGTACCTCGCCGACGTCGAAGGCTTCGCGTATCAAGAGATCGCGGACATCATGAAAACCCCCATCGGCACGGTCATGAGCCGTCTGCATCGCGGCAGGCGGATGCTGCGTGACCTGCTGGCCGACTACGCGCGGGAGCGCGGCATCAAGGTGCCGGCTGCCGCCCCCTCAAGGAGCAAGAAATGA
PROTEIN sequence
Length: 226
VTATLAPVPADLSEVDWAAMEEQAAAEPQTTQDPRVQFEQQALPFMDQLYAAAMRMTRNPADAADLVQETFVKAFASWASFTQGTNLKAWLYRILTNTYINTYRKKQREPYQGTIDDLEDWQLGGAESTTATSTRSAEAEAIDHMPASVVKDALQSLPEDFRLAVYLADVEGFAYQEIADIMKTPIGTVMSRLHRGRRMLRDLLADYARERGIKVPAAAPSRSKK*