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SCNpilot_expt_1000_bf_scaffold_1596_3

Organism: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7

near complete RP 46 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 1
Location: comp(1681..2076)

Top 3 Functional Annotations

Value Algorithm Source
DNA-binding domain-containing protein, AraC-type n=1 Tax=Rhizobium sp. CF080 RepID=J2KNR7_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 55.1
  • Coverage: 127.0
  • Bit_score: 139
  • Evalue 3.00e-30
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EUB99390.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 55.1
  • Coverage: 127.0
  • Bit_score: 139
  • Evalue 4.20e-30
helix-turn-helix domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 45.7
  • Coverage: 129.0
  • Bit_score: 109
  • Evalue 1.10e-21

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Taxonomy

Rhizobium sp. CF080 → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 396
GTGGAGATCGTCGTCGAAACCATTTCGGCCGTCATGCGGGCCGAGCGCCGCACCGATGGCCCGCAGCTTCTCGCCCGCCACGATGCCGCCCGTCTGCAGCGGGCCAAGGATATCATCGCCGTCAACCTGATGCAGCCGCTCAGCGTCGACATGGTCGCTCGCGAGGCCGGCATCAGCGCCAGCGGGCTGCAACGCCTCTTCCGCCTGTCGGAAGGCATGGGTGTCTTCGCCTATGTCCGCCAGCAACGGCTGGAACGCGCCTTCGAGGCGCTGAAAGCCCATGAGGCGACTATCCAGCAAGCCAGCATCATCGCCGGTTACACCAATCCCGCCAACTTCACCACTGCGTTCAAGCGCCATTTCGGCAAGACTCCGCGTTCGATATTTTGTGAATGA
PROTEIN sequence
Length: 132
VEIVVETISAVMRAERRTDGPQLLARHDAARLQRAKDIIAVNLMQPLSVDMVAREAGISASGLQRLFRLSEGMGVFAYVRQQRLERAFEALKAHEATIQQASIIAGYTNPANFTTAFKRHFGKTPRSIFCE*