ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4445_5

Organism: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7

near complete RP 46 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 1
Location: comp(4113..5573)

Top 3 Functional Annotations

Value Algorithm Source
RND efflux system, outer membrane lipoprotein, NodT family n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZNH6_RHILW similarity UNIREF
DB: UNIREF100
  • Identity: 66.8
  • Coverage: 482.0
  • Bit_score: 626
  • Evalue 1.80e-176
  • rbh
NodT family RND efflux system outer membrane lipoprotein similarity KEGG
DB: KEGG
  • Identity: 66.8
  • Coverage: 482.0
  • Bit_score: 626
  • Evalue 5.50e-177
  • rbh
Efflux transporter, outer membrane factor lipoprotein, NodT family {ECO:0000313|EMBL:EJB05703.1}; Flags: Precursor;; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 66.8
  • Coverage: 482.0
  • Bit_score: 626
  • Evalue 2.50e-176

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhizobium leguminosarum → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1461
ATGATGTCCATTCGAGCTGCCGCCGCCTTCGCCGGTCTGTTGACGCTGTCGGGCTGCGTAGTCGGTCCTGATCACCAGGCGCCGGAGATGGTGCTTCCGGCCAAATTCGCAGAAGGCGGTGTCAAGTCCAATGGCGATATCGCCATGAAGGACTGGTGGACCGCATTCCGCGACAAGCGCCTGAACGGTTATGTCGTCCAGGGCCAGGAACAGAACCTGACGATTCTCCAGGCACTTGAGCGCATCAATGCCGCCGAGGCCAACGTCGTCTCCGCCGGCGCCGGCGCATTGCCGCAAGGGCAGCTTGGCGCCTCGCATACGGTCAGCGGACAAGGCGGTAGCCGGAACCTGCGCACGCAGACGGATGTCCGCAACATCTCCAGCGGCAGCCTGTCGGTATCCTGGCTGCTCGACCTGTTCGGCCAGTATGCCCGAGCACGCGAAAGTGCCGTGGCCTCGCTGGACGCGGCCTATGCCGATATCGACATCGCGCGGCTGACCCTGCTGTCCAACGTCGTCTCGGCTTATATCGATGCGCGTTACTACCAGGAACTGCTGGCGATTTCCCGCAAGAACCTGGGGTCCCGCCGCGAGACGCTGAACCTCACGCGCTTCCAGCTCGAAGCCGGCGCCGCTTCCCGCCTCGACGTCGTGCAGGCAGAAGGTCTGGTCAACTCGACGCTGTCGGAAATCCCGGGGCTCGAAACCCGCTTCCGCGTTTCCGTGCATCGCGTCTCGACATTGCTTGGCCTGCCAGCCTCGACGCTGATCGGCGACATGCAGAAGAGCGGCGGCCAGCCGGTGGCGCGCATGAACGTCCGTGCCGGCGTCCCGGCCGATCTGATCCGCAATCGTCCCGACATCCGCCGGGCGGAGCGCGAACTGGCGGCGGCCGTCGCCAATATCGGCGTCGCCGAAGCGCAGCTCTATCCGTCGATCACGCTGGGCGGCAGCATCCAGCCGAGCTATCTCGGCTCCAGCTCGATCAAGGGCGGCCTCGTCAACTGGTCGTTCGGCCCGAGCATTACGCTTCCGATCCTCGATGGCGGCCGCCTGAAGGCCGGTGTCGATATCGCCAAGTCCAATGCCAAGACGCAGTATCTGGTCTGGAAGGCGACGGTTCTGAACGGCGTCGAAGAGGTCGAGAACGCGCTCGCCGCCGTCTCCCGCGATGCCCAGACGGTCTCGGCGCTGCGCGCCCAGGTTCGCTCCTACGAAGAAGCCCTGACGCTGGCCACCGCCAGCTACAAGGACGGCGCCTCCTCGTTGCTCGACGTGCTCGACGCCCAGCGTCAGGTCTCGGCGGCGCAGACGAGCCTCGCCCAGGCGATCCAGCAGCAGGCCCGCGACTACGTTTCGCTCAACGTCGCCATTGGCGGCGGCTATTCGCCGGACGGCAGTTCGCCCGCGGTCCAGAAGGTCGTCGCGACCAAGACGACCAAGGTCGTCGTCGCCAACTGA
PROTEIN sequence
Length: 487
MMSIRAAAAFAGLLTLSGCVVGPDHQAPEMVLPAKFAEGGVKSNGDIAMKDWWTAFRDKRLNGYVVQGQEQNLTILQALERINAAEANVVSAGAGALPQGQLGASHTVSGQGGSRNLRTQTDVRNISSGSLSVSWLLDLFGQYARARESAVASLDAAYADIDIARLTLLSNVVSAYIDARYYQELLAISRKNLGSRRETLNLTRFQLEAGAASRLDVVQAEGLVNSTLSEIPGLETRFRVSVHRVSTLLGLPASTLIGDMQKSGGQPVARMNVRAGVPADLIRNRPDIRRAERELAAAVANIGVAEAQLYPSITLGGSIQPSYLGSSSIKGGLVNWSFGPSITLPILDGGRLKAGVDIAKSNAKTQYLVWKATVLNGVEEVENALAAVSRDAQTVSALRAQVRSYEEALTLATASYKDGASSLLDVLDAQRQVSAAQTSLAQAIQQQARDYVSLNVAIGGGYSPDGSSPAVQKVVATKTTKVVVAN*