ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1569_6

Organism: SCNPILOT_CONT_300_BF_Xanthomonadales_66_150

near complete RP 46 / 55 BSCG 46 / 51 MC: 3 ASCG 11 / 38 MC: 1
Location: comp(7993..9318)

Top 3 Functional Annotations

Value Algorithm Source
Secretion protein HlyD n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WN92_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 54.3
  • Coverage: 376.0
  • Bit_score: 394
  • Evalue 1.00e-106
Secretion protein HlyD {ECO:0000313|EMBL:EIM00934.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.3
  • Coverage: 376.0
  • Bit_score: 394
  • Evalue 1.40e-106
RND family efflux transporter, MFP subunit similarity KEGG
DB: KEGG
  • Identity: 52.4
  • Coverage: 389.0
  • Bit_score: 391
  • Evalue 2.70e-106

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhodanobacter thiooxydans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1326
ATGAACTCGAATAATCATGTGATGGACGAAATTGAACCCCTCTCCCTCCGGGAGAGGGGCAGGGGTGAGGGTTCGGATCAGCCCGGTGCTGCAACCCTGCGCGAGCGTCTCATCCTTTCGGGTATTTCGAACCCTCACCCGGCGCTGCGCGCCACCCTCTCCCGGAGGGAGAGGGGAAAAAGCGGTACGCCGCCGTTGCGCGCGATGGGCACCATGCTCGCGGTTGTTTTTGCGGCGTGTCTCGCCGGGTGCTCGGGTCACCCGCAGTCCGTGGAGTCATCCACCACGCCGCACAACGTCACCCTGACGAAGGAACAGCAAGCCAGCATCCACGTCGTCACGGTCGCGGTGACGCAGTACCACGCCACCATCACCACGACCGGCGTGGTGGATTTCGATCGCAACCGCGCGACCGACATCCTGGCGCCGTTCTCCGGCGCGGTGACGAAGGTGCTGGTGACACAAGGCCAGCACGTCGCGAAAGGGCAGGCCCTCGCGGAAGTGGCCTCGCCCGATTTCGCCACGGCCGCAGGCGCCTATCGGCAGACGGTGCTGGCCGCGAAGGCGGCCGACGCGGTGGCGTCGAATGATCGCGACCTGTTCGCGCACCAGGCGATTTCCGAGCGCGAGAACGCGCAGGCGCAGGCCGATGCCGCGACCGCCGACGCCAATCGCGCCGCCGCGCTGCAAACGCTGGTGGCGTTGCACATGGACCCGCAAGCCATCGCGGCCATCCGCGACGGGAAAACCGTGGCGGGCGGGCAGGGCGTGATCCGCGCGCCGATCGCAGGCACGCTGGTCGCGAAATCCATTGCGCCGGGACAAACGTTGGCCGCCGGCACCACGCCGTGCTTCACCATCGCCGACACCGCGACGATGTGGGTGATGGCGAATGTCTTCGGTGGCGACGCCGCAGGCGTGCGGGTGGGTGATCCGGCTGCCGTGGTGACGGGCGATGGCGACAAGCCGATCGACGGCACCGTCACCAATGTCGGCGCGGTGATCGATCCGGACACGCGCGCGGTCGCGGCACGCGTGCACGTGGACAACGCCAACGACGTGCTGAAGAAACAGATGTACGTGACGGTGCGCATCCAGTCGCACGCGCCGCACCACGGACTGCTGGTCCCCGTGACCGCGGTGCTGCGCGACGACGAAAACCTGCCGTTCGTGTACGTGGTCGAATCCGACGGCAGTTACGCGCGCCGCCCGGTCACGCTGGGCGCGCGCGTGGACGACCGCTACGTGATTCCGGAAGGACTCCACCACGGCGACAAGGTGGTGGTGGACGGCAGCATCTTCCTGCAATTCATCCAGTCGCAATGA
PROTEIN sequence
Length: 442
MNSNNHVMDEIEPLSLRERGRGEGSDQPGAATLRERLILSGISNPHPALRATLSRRERGKSGTPPLRAMGTMLAVVFAACLAGCSGHPQSVESSTTPHNVTLTKEQQASIHVVTVAVTQYHATITTTGVVDFDRNRATDILAPFSGAVTKVLVTQGQHVAKGQALAEVASPDFATAAGAYRQTVLAAKAADAVASNDRDLFAHQAISERENAQAQADAATADANRAAALQTLVALHMDPQAIAAIRDGKTVAGGQGVIRAPIAGTLVAKSIAPGQTLAAGTTPCFTIADTATMWVMANVFGGDAAGVRVGDPAAVVTGDGDKPIDGTVTNVGAVIDPDTRAVAARVHVDNANDVLKKQMYVTVRIQSHAPHHGLLVPVTAVLRDDENLPFVYVVESDGSYARRPVTLGARVDDRYVIPEGLHHGDKVVVDGSIFLQFIQSQ*