ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1172_28

Organism: SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial

near complete RP 43 / 55 MC: 2 BSCG 43 / 51 MC: 2 ASCG 9 / 38
Location: 24384..25187

Top 3 Functional Annotations

Value Algorithm Source
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UE95_SINMW similarity UNIREF
DB: UNIREF100
  • Identity: 50.4
  • Coverage: 258.0
  • Bit_score: 251
  • Evalue 1.10e-63
ABC transporter, permease protein {ECO:0000313|EMBL:AII86206.1}; TaxID=666509 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Planktomarina.;" source="Planktomarina temperata RCA23.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.1
  • Coverage: 242.0
  • Bit_score: 262
  • Evalue 8.80e-67
binding-protein-dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 50.4
  • Coverage: 258.0
  • Bit_score: 251
  • Evalue 3.50e-64

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Planktomarina temperata → Planktomarina → Rhodobacterales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 804
ATGACAGCTAACGGCATTGCCCCTTCGCGGCTCGCCCGGCAGGCTGCCAGCATCGGGCTGGCTTTGATCGTGCCGGCGCTCGTCGTGGCGGCATGGGCGGCGGTGCCGTTCTTCGTCAAGGTGCCGGCTTACAAGCTGCCGACCGTCATGGAGATCGGCGAGCAGTTCTGGGTGCTCACCTCCAGCGGTAAGCTAGGTTGGGAACTCCTGGTGAGCGGCAGCCGGTTCATCGTCGGCCTGTTGCTGGGGACGGCGCTCGCGCTTCCGCTCGGGCTCGCGATTGCGCTCAACCGCCACGTCTCCGACGTGGTGCGGCCGGCGCTGGTCTTCTTCCAGGCGATCGCGGGCATCGCCTGGGTGCCGATGGCGATCATCTGGTTCGGCTTCGGCCAGGGCCCGGTCATCTTCGTCATCGCAAACACCGTGTTCTTCAGTACCATCTACAACGTGGTGAGGGGAGTCGAATCCATCCCCGCCGTCTTACGCAACGCCGTCCGCTCGATGGGCGGAACGGGGATCGGCTATTTCCGCGAACTGATCCTACCGGGAGCGCTCGTGCAGATCATCGTCGGGCTGCGGACCTCGATGGCGTTCGGACTGCGCGCGCTGGTGGGCGCCGAGATGATCGCCGGTACGAGCGGGCTCGGCTTCATGACCATCGACGCCTCGCAATCCTACGGCACCGACACGGTCATCGTCGGCATGCTGGTGATCGCCGTGGTGTGGTACGTGCTCGACCGCGCAGTCTTCATTCCGCTCGAGCGCAAGACGGTGGTGCGCTGGGGACTGCAGAGGTTTCAATAG
PROTEIN sequence
Length: 268
MTANGIAPSRLARQAASIGLALIVPALVVAAWAAVPFFVKVPAYKLPTVMEIGEQFWVLTSSGKLGWELLVSGSRFIVGLLLGTALALPLGLAIALNRHVSDVVRPALVFFQAIAGIAWVPMAIIWFGFGQGPVIFVIANTVFFSTIYNVVRGVESIPAVLRNAVRSMGGTGIGYFRELILPGALVQIIVGLRTSMAFGLRALVGAEMIAGTSGLGFMTIDASQSYGTDTVIVGMLVIAVVWYVLDRAVFIPLERKTVVRWGLQRFQ*