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SCNpilot_expt_1000_bf_scaffold_4282_13

Organism: SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial

near complete RP 43 / 55 MC: 2 BSCG 43 / 51 MC: 2 ASCG 9 / 38
Location: comp(9513..9872)

Top 3 Functional Annotations

Value Algorithm Source
rne; ribonuclease E; K08300 ribonuclease E [EC:3.1.26.12] similarity KEGG
DB: KEGG
  • Identity: 43.0
  • Coverage: 114.0
  • Bit_score: 80
  • Evalue 4.80e-13
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 43.0
  • Coverage: 114.0
  • Bit_score: 80
  • Evalue 2.10e-12
Ribonuclease E n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IXF7_POLGS similarity UNIREF
DB: UNIREF100
  • Identity: 43.0
  • Coverage: 114.0
  • Bit_score: 80
  • Evalue 1.50e-12

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Taxonomy

Polymorphum gilvum → Polymorphum → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 360
GTGCAGGCGCTGGACGTCCAAGTGACGGCGGAAGCCTCAGTGCTCGGCGCGGATGCCGAGCCGGAGGCCGTCGAGGCCCAGCCTGCGCCGGTGGCGGAAGAGCCGGCCGCGCCTGCGGCCAAGCCTGCCCGCCGCTCGCGCAAGAAGACGGAACCTGCGGCCGAGACCGGCGAGGTCGGCGCCGAGCCGGCAGCGCCGGAGCCCGTCGCGCAGGCGCCGGAACCCGCTCCGGAGCCGGCGCGCAAGGCCGCCCCGGCCGAGCCCGTCGTCACGGTCTCGGGCGCCGAGGCGCAGCCGGACGAACAGGCGACCGACAAGCCGCGCAAGGCCGGCTGGTGGCAGCGGAAGAGCTTCTTCTGA
PROTEIN sequence
Length: 120
VQALDVQVTAEASVLGADAEPEAVEAQPAPVAEEPAAPAAKPARRSRKKTEPAAETGEVGAEPAAPEPVAQAPEPAPEPARKAAPAEPVVTVSGAEAQPDEQATDKPRKAGWWQRKSFF*