ggKbase home page

SCNpilot_expt_1000_bf_scaffold_30621_5

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_59_19

partial RP 30 / 55 MC: 3 BSCG 29 / 51 MC: 2 ASCG 5 / 38
Location: comp(3110..3361)

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JKM4_AGRRK similarity UNIREF
DB: UNIREF100
  • Identity: 56.1
  • Coverage: 66.0
  • Bit_score: 72
  • Evalue 1.70e-10
transcriptional regulator protein similarity KEGG
DB: KEGG
  • Identity: 56.1
  • Coverage: 66.0
  • Bit_score: 72
  • Evalue 5.30e-11
Transcriptional regulator {ECO:0000313|EMBL:EJK86402.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 56.1
  • Coverage: 66.0
  • Bit_score: 72
  • Evalue 2.40e-10

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhizobium sp. AP16 → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 252
ATGGAATGGATGCGGCTGGTCGCTCCCGGCATCACGGCCGTGCGTCAGCCTGTCGAGGAAATGGCCGAGCAGGCCTGGGCGCTGCTGTTGCGACGCATGACCGGCTCTGGAGGAAAGCCGGTTACGCGACGCCTGCGCTGCGCCGTCGAGATCCGCGGTTCGACGCCGCGGAGCCCGCTTGAGGAGGCGGGTAAAACGAAACTGGGAGGAGAAAAATGGAAGTTACAAGACGAACCATACTCGCCGGAATAG
PROTEIN sequence
Length: 84
MEWMRLVAPGITAVRQPVEEMAEQAWALLLRRMTGSGGKPVTRRLRCAVEIRGSTPRSPLEEAGKTKLGGEKWKLQDEPYSPE*