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SCNpilot_expt_1000_bf_scaffold_5434_4

Organism: SCNPILOT_CONT_300_BF_Sphingomonadales_66_39

near complete RP 46 / 55 MC: 2 BSCG 47 / 51 MC: 4 ASCG 9 / 38 MC: 1
Location: comp(1145..1579)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor n=1 Tax=Sphingomonas elodea RepID=UPI00026321A1 similarity UNIREF
DB: UNIREF100
  • Identity: 60.1
  • Coverage: 163.0
  • Bit_score: 172
  • Evalue 3.50e-40
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:AIT05927.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.6
  • Coverage: 163.0
  • Bit_score: 159
  • Evalue 4.30e-36
fecI; RNA polymerase sigma-70 family protein similarity KEGG
DB: KEGG
  • Identity: 32.4
  • Coverage: 139.0
  • Bit_score: 70
  • Evalue 4.60e-10

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Taxonomy

Sphingomonas taxi → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 435
ATGTTGCGGCGGCTTCTGGCCGCGCGGCTGGGTAGCCGTGACGATGCCGAAGACGCACTCCAGGACCTATGGTTGAAGCTCGACCATGTTCAGGCGCCGATCGCGCAGCCCGCGGCCTTCCTGTACCGGATGGCCGCGAACCATGCGACCGATCGCCGCATGCCTGCTGCGGTCGCCGACCCGGAAGGGGCGATCGCCGCAGCCGACGATCGGCGGGCGCTGGAACGGGCGATCGCCGCGATGCCCGAACGTATGGCGACGGCACTGCGTATGTTCAGGCTGGAGGAGCAGCCGCAACGGGCAGTCGCGGAGCATCTGGGCATCAGCGTGAGCGGCGTCGAGAAGCTGCTGGCGCGCGCCTATCGCAGGATTCACGATTCGCTGTCGGAGCCCGATGCCTCGGGCGAGACGAAAGGGGGCAGCAATGACGGCTGA
PROTEIN sequence
Length: 145
MLRRLLAARLGSRDDAEDALQDLWLKLDHVQAPIAQPAAFLYRMAANHATDRRMPAAVADPEGAIAAADDRRALERAIAAMPERMATALRMFRLEEQPQRAVAEHLGISVSGVEKLLARAYRRIHDSLSEPDASGETKGGSNDG*