ggKbase home page

SCNpilot_expt_1000_bf_scaffold_12268_1

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_61_16

partial RP 31 / 55 MC: 2 BSCG 31 / 51 MC: 5 ASCG 8 / 38 MC: 2
Location: 3..662

Top 3 Functional Annotations

Value Algorithm Source
Pilus (Caulobacter type) biogenesis lipoprotein CpaD n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QJU9_METTR similarity UNIREF
DB: UNIREF100
  • Identity: 49.1
  • Coverage: 218.0
  • Bit_score: 222
  • Evalue 5.90e-55
pilus biogenesis lipoprotein CpaD; K02281 pilus assembly protein CpaD similarity KEGG
DB: KEGG
  • Identity: 42.8
  • Coverage: 201.0
  • Bit_score: 153
  • Evalue 1.10e-34
Pilus biogenesis lipoprotein CpaD {ECO:0000313|EMBL:ACI57451.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 42.8
  • Coverage: 201.0
  • Bit_score: 153
  • Evalue 4.70e-34

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhizobium leguminosarum → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 660
TCCTTAGCAGGGTGCGCCACGCCGGACCGACTTACGACAGCGACCGGTTATCCCGAGGACTTCCGCCCCCGCTATCCGATCGTCCTGACGGAAACGCCGACCACACTCGACATTTTCCCAACCATGCGTGGGCTTGATAAGAGCAATGCGCAACGCATCCGCTCTTTCGCCGCCGACTATCTTGTCAACGGCCATGGCCCGGTCGTCATTCAAATGCCGGCCAACGGGGGCAGCCACTCATTTGCCCGCCCGGCCGTCGATCAAATCCGCCAGCAACTGCACGCCTCCGGCGTCAAGGGTTACGTGCAAGTCGGCACCTATCTCCCCAACGATCCCATGCAAGCCTCTCCCATTCGACTGAGCTATGTCGGCCTGGGCGCTCGCACCACGCGGCCCTGCGGCGAGTGGCCCCGTGATCTGGCCTCGGCCAGCAGCATGGAAGGCTGGGAAAACAAATCTTACTGGAACTTCGGCTGCGCGACGCAGGCCAATTTCGCCAGCCAGGTGGCTGATCCGCGCGATCTCGCGGCGCCGCGTGGCGAAACGCCAGGCGACGTTTCCATGCGCACACGCGCCATCGGCAAGGTGCGGACGGGTGACGATCCTTCGGTCAAATGGATGGTGCGTAACAGCTCCATCGGTTCGACAGGAGGCAACTAA
PROTEIN sequence
Length: 220
SLAGCATPDRLTTATGYPEDFRPRYPIVLTETPTTLDIFPTMRGLDKSNAQRIRSFAADYLVNGHGPVVIQMPANGGSHSFARPAVDQIRQQLHASGVKGYVQVGTYLPNDPMQASPIRLSYVGLGARTTRPCGEWPRDLASASSMEGWENKSYWNFGCATQANFASQVADPRDLAAPRGETPGDVSMRTRAIGKVRTGDDPSVKWMVRNSSIGSTGGN*