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SCNpilot_expt_1000_bf_scaffold_12711_2

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_61_16

partial RP 31 / 55 MC: 2 BSCG 31 / 51 MC: 5 ASCG 8 / 38 MC: 2
Location: comp(946..1425)

Top 3 Functional Annotations

Value Algorithm Source
GntR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00037DA3EE similarity UNIREF
DB: UNIREF100
  • Identity: 64.3
  • Coverage: 154.0
  • Bit_score: 198
  • Evalue 6.60e-48
Variovorax paradoxus strain MEDvA23 contig_18, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33933.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.3
  • Coverage: 154.0
  • Bit_score: 199
  • Evalue 3.20e-48
transcriptional regulator, LysR family similarity KEGG
DB: KEGG
  • Identity: 64.3
  • Coverage: 154.0
  • Bit_score: 197
  • Evalue 3.60e-48

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 480
GTGCAGGGCGGTCTCGCCGATATCGGCGTGTTCGAGGCCGGTACGCCGGCGCCAGACCTCGACTGCCTACCCTTCGCGCGCGACGAACTCGCCGTCGTGGTCGCGGCTAGCCATCCGCTGGCACGCCGGCGCCGCGTTGGACTGGAGGAGGTGTTGAACTGCGAACATGTGATCGTGCGCGAGGGAACGGCCGTTCATCGCGCGTTGCAGGCGGCCGCGCAGGAGGCGCAACGCCCGCTGCAGGTGCGCATGCAGGTCGGCAGTTTCGAGATGGTTTGTCGTATGGTCGAGCAGGGGGTGGGGATCGGCGTGGTGCCGCGCGCGGTCGTTCAGCAGGAGCCTGCATCGGCCAAGCTGCGCTGTCTCGCGCTCGATGCGCCTTGGGCTTCGCGCCAGCATGTGCTGGGCGTGCGATGGCTCAACGGGCTGTCGGTCGCCGCGAGCGCGCTGTTGCAACACCTGCGCGCCGCGATGGCGTGA
PROTEIN sequence
Length: 160
VQGGLADIGVFEAGTPAPDLDCLPFARDELAVVVAASHPLARRRRVGLEEVLNCEHVIVREGTAVHRALQAAAQEAQRPLQVRMQVGSFEMVCRMVEQGVGIGVVPRAVVQQEPASAKLRCLALDAPWASRQHVLGVRWLNGLSVAASALLQHLRAAMA*