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SCNpilot_cont_750_p_UNK

In projects: SCNPILOT_CONT_750_P

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 8.68 Longest contig: 77.80 Kbp Bin length: 113.12 Mbp GC content: 56.02 %
Contigs count: 58943 Features count: 154683 rRNAs count: 22 tRNAs count: 459

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 20
Displaying items 58101-58150 of 58943 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_750_p_scaffold_77393
Species: Afipia felis (100%)
3 1088 bp 64.06 4.14 100.37
SCNpilot_cont_750_p_scaffold_58132
Species: Oligotropha carboxidovorans (66.67%)
3 1357 bp 64.63 7.55 100.37
SCNpilot_cont_750_p_scaffold_58340 3 1354 bp 68.39 3.32 100.37
SCNpilot_cont_750_p_scaffold_78007
Species: Brevibacterium linens (100%)
2 1082 bp 64.14 2.31 100.37
SCNpilot_cont_750_p_scaffold_58463 4 1351 bp 57.22 8.70 100.37
SCNpilot_cont_750_p_scaffold_31509 5 2158 bp 51.20 7.65 100.37
SCNpilot_cont_750_p_scaffold_78554
Genus: Mycobacterium (66.67%)
3 1076 bp 66.17 4.41 100.37
SCNpilot_cont_750_p_scaffold_46433
Species: Brevundimonas nasdae (66.67%)
3 1608 bp 62.81 26.74 100.37
SCNpilot_cont_750_p_scaffold_59141
Order: Rhodospirillales (66.67%)
3 1339 bp 72.52 3.73 100.37
SCNpilot_cont_750_p_scaffold_20966
Species: Afipia felis (100%)
4 2935 bp 62.42 5.45 100.37
SCNpilot_cont_750_p_scaffold_79775
Species: Mycobacterium rhodesiae (100%)
2 1064 bp 67.29 1.88 100.38
SCNpilot_cont_750_p_scaffold_80014
Species: Leucobacter sp. UCD-THU (50%)
2 1061 bp 72.10 2.59 100.38
SCNpilot_cont_750_p_scaffold_18960
Species: Phyllobacterium sp. YR531 (75%)
4 3177 bp 66.86 4.72 100.38
SCNpilot_cont_750_p_scaffold_38546
Order: Rhodospirillales (66.67%)
3 1850 bp 77.62 3.65 100.38
SCNpilot_cont_750_p_scaffold_47795
Species: Diplodia seriata (50%)
2 1575 bp 64.25 9.52 100.38
SCNpilot_cont_750_p_scaffold_60826 3 1312 bp 59.15 3.05 100.38
SCNpilot_cont_750_p_scaffold_32802
Species: Roseovarius sp. BRH_c41 (66.67%)
3 2095 bp 62.91 5.49 100.38
SCNpilot_cont_750_p_scaffold_60974
Species: Mycobacterium arupense (66.67%)
3 1309 bp 69.21 3.25 100.38
SCNpilot_cont_750_p_scaffold_81532
Species: Chloroflexus aggregans (50%)
2 1046 bp 69.31 2.39 100.38
SCNpilot_cont_750_p_scaffold_81875
Species: Rhodanobacter denitrificans (100%)
2 1043 bp 69.89 5.51 100.38
SCNpilot_cont_750_p_scaffold_81890 2 1043 bp 62.32 7.19 100.38
SCNpilot_cont_750_p_scaffold_81907 3 1043 bp 62.99 5.75 100.38
SCNpilot_cont_750_p_scaffold_61307
Species: Novosphingobium sp. MD-1 (100%)
2 1303 bp 71.07 2.30 100.38
SCNpilot_cont_750_p_scaffold_39274
Species: Terriglobus roseus (50%)
2 1823 bp 70.54 3.57 100.38
SCNpilot_cont_750_p_scaffold_82547 3 1037 bp 58.73 1.93 100.39
SCNpilot_cont_750_p_scaffold_48800
Order: Rhodospirillales (66.67%)
3 1551 bp 63.38 3.55 100.39
SCNpilot_cont_750_p_scaffold_82859
Species: Gordonia sputi (100%)
2 1034 bp 70.31 2.66 100.39
SCNpilot_cont_750_p_scaffold_21822
Species: Microbacterium mangrovi (60%)
5 2842 bp 71.53 4.49 100.39
SCNpilot_cont_750_p_scaffold_39806
Genus: Rhodanobacter (100%)
3 1805 bp 66.26 22.02 100.39
SCNpilot_cont_750_p_scaffold_39879
Species: Acidiphilium multivorum (66.67%)
3 1802 bp 66.04 4.16 100.39
SCNpilot_cont_750_p_scaffold_49146
Phylum: Proteobacteria (66.67%)
3 1542 bp 57.78 2.59 100.39
SCNpilot_cont_750_p_scaffold_83393
Species: Rhodopseudomonas palustris (66.67%)
3 1028 bp 57.68 2.43 100.39
SCNpilot_cont_750_p_scaffold_33676
Species: Pedosphaera parvula (66.67%)
3 2053 bp 58.69 5.60 100.39
SCNpilot_cont_750_p_scaffold_28977
Species: Acidisphaera rubrifaciens (50%)
2 2298 bp 70.32 3.92 100.39
SCNpilot_cont_750_p_scaffold_63039 4 1276 bp 56.11 8.82 100.39
SCNpilot_cont_750_p_scaffold_84357
Species: Bradyrhizobium elkanii (100%)
2 1019 bp 59.47 3.68 100.39
SCNpilot_cont_750_p_scaffold_84376
Species: Cellulomonas cellasea (50%)
2 1019 bp 69.68 2.45 100.39
SCNpilot_cont_750_p_scaffold_49785
Order: Rhodospirillales (66.67%)
3 1527 bp 72.89 8.84 100.39
SCNpilot_cont_750_p_scaffold_49800
Order: Rhizobiales (66.67%)
3 1527 bp 69.88 6.88 100.39
SCNpilot_cont_750_p_scaffold_84736
Species: Cylindrospermum stagnale (50%)
2 1016 bp 59.45 3.44 100.39
SCNpilot_cont_750_p_scaffold_63433
Species: Afipia felis (100%)
2 1270 bp 60.87 8.27 100.39
SCNpilot_cont_750_p_scaffold_25324
Phylum: Rokubacteria (50%)
4 2540 bp 61.89 6.99 100.39
SCNpilot_cont_750_p_scaffold_85376
Species: Rhodopseudomonas palustris (100%)
2 1010 bp 62.57 4.95 100.40
SCNpilot_cont_750_p_scaffold_86042
Species: Acidisphaera rubrifaciens (50%)
2 1004 bp 75.50 3.49 100.40
SCNpilot_cont_750_p_scaffold_86063
Species: Parvibaculum lavamentivorans (50%)
2 1004 bp 65.94 3.49 100.40
SCNpilot_cont_750_p_scaffold_13142
Species: Rhodanobacter thiooxydans (60%)
5 4261 bp 71.16 21.24 100.40
SCNpilot_cont_750_p_scaffold_50863
Species: Afipia felis (100%)
3 1503 bp 62.21 4.99 100.40
SCNpilot_cont_750_p_scaffold_86369
Species: Microbispora sp. ATCC PTA-5024 (50%)
2 1001 bp 68.83 3.25 100.40
SCNpilot_cont_750_p_scaffold_65213
Order: Xanthomonadales (66.67%)
3 1243 bp 69.11 4.83 100.40
SCNpilot_cont_750_p_scaffold_41840
Species: Rhodanobacter fulvus (100%)
3 1739 bp 71.54 5.03 100.40
Displaying items 58101-58150 of 58943 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.