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SCNpilot_cont_750_p_UNK

In projects: SCNPILOT_CONT_750_P

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 8.68 Longest contig: 77.80 Kbp Bin length: 113.12 Mbp GC content: 56.02 %
Contigs count: 58943 Features count: 154683 rRNAs count: 22 tRNAs count: 459

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 20
Displaying items 58251-58300 of 58943 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_750_p_scaffold_32284
Species: Novosphingobium sp. MD-1 (66.67%)
3 2122 bp 67.77 3.18 100.52
SCNpilot_cont_750_p_scaffold_71772
Species: Acyrthosiphon pisum (50%)
2 1155 bp 67.71 13.20 100.52
SCNpilot_cont_750_p_scaffold_15849
Species: Afipia broomeae (75%)
4 3656 bp 61.57 11.56 100.52
SCNpilot_cont_750_p_scaffold_72042
Species: Afipia broomeae (50%)
2 1152 bp 64.76 3.04 100.52
SCNpilot_cont_750_p_scaffold_26026
Species: Microbacterium azadirachtae (75%)
4 2492 bp 70.79 3.71 100.52
SCNpilot_cont_750_p_scaffold_37317
Order: Rhizobiales (66.67%)
3 1895 bp 64.91 24.80 100.53
SCNpilot_cont_750_p_scaffold_20387
Genus: Skermanella (50%)
4 2999 bp 65.16 7.34 100.53
SCNpilot_cont_750_p_scaffold_43621
Species: Roseomonas cervicalis (60%)
5 1686 bp 69.93 4.45 100.53
SCNpilot_cont_750_p_scaffold_74674
Species: Propionibacterium freudenreichii (50%)
2 1119 bp 71.40 3.13 100.54
SCNpilot_cont_750_p_scaffold_30631 2 2205 bp 50.75 4.76 100.54
SCNpilot_cont_750_p_scaffold_14884
Species: Nitrosomonas eutropha (100%)
3 3849 bp 61.73 5.20 100.55
SCNpilot_cont_750_p_scaffold_62555
Species: Rhizobium leguminosarum (66.67%)
3 1283 bp 59.70 3.90 100.55
SCNpilot_cont_750_p_scaffold_30906
Species: Microbacterium oxydans (100%)
2 2190 bp 66.85 4.22 100.55
SCNpilot_cont_750_p_scaffold_31025
Species: Leifsonia aquatica (100%)
3 2184 bp 72.85 3.43 100.55
SCNpilot_cont_750_p_scaffold_77073
Domain: Bacteria (66.67%)
3 1092 bp 71.43 3.21 100.55
SCNpilot_cont_750_p_scaffold_11018 9 4911 bp 58.66 5.45 100.55
SCNpilot_cont_750_p_scaffold_63366
Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated (50%)
2 1271 bp 62.08 3.54 100.55
SCNpilot_cont_750_p_scaffold_63567 3 1268 bp 66.09 5.52 100.55
SCNpilot_cont_750_p_scaffold_63603
Species: Rhodanobacter denitrificans (50%)
2 1268 bp 70.11 18.93 100.55
SCNpilot_cont_750_p_scaffold_19729
Species: Rhodopseudomonas palustris (50%)
4 3079 bp 64.11 11.04 100.55
SCNpilot_cont_750_p_scaffold_77616
Species: Novosphingobium sp. MD-1 (100%)
2 1086 bp 69.15 4.14 100.55
SCNpilot_cont_750_p_scaffold_77627
Species: Novosphingobium sp. MD-1 (66.67%)
3 1086 bp 70.35 2.30 100.55
SCNpilot_cont_750_p_scaffold_45781
Species: Mycobacterium arupense (100%)
2 1626 bp 68.63 3.38 100.55
SCNpilot_cont_750_p_scaffold_64144
Species: Cupriavidus taiwanensis (50%)
2 1259 bp 65.21 2.78 100.56
SCNpilot_cont_750_p_scaffold_64154 3 1259 bp 65.37 9.33 100.56
SCNpilot_cont_750_p_scaffold_78476
Species: Delftia acidovorans (50%)
2 1077 bp 59.61 356.08 100.56
SCNpilot_cont_750_p_scaffold_54004
Species: Hyphomonas chukchiensis (50%)
2 1435 bp 59.02 3.14 100.56
SCNpilot_cont_750_p_scaffold_54338
Species: Microbacterium azadirachtae (66.67%)
3 1429 bp 74.95 2.97 100.56
SCNpilot_cont_750_p_scaffold_64757
Species: Bradyrhizobium sp. DFCI-1 (50%)
2 1250 bp 61.76 4.00 100.56
SCNpilot_cont_750_p_scaffold_64962
Species: Novosphingobium sp. MD-1 (100%)
2 1247 bp 71.21 2.00 100.56
SCNpilot_cont_750_p_scaffold_54605
Species: Mycobacterium abscessus (50%)
2 1423 bp 66.06 2.99 100.56
SCNpilot_cont_750_p_scaffold_46926
Species: Rhodopseudomonas palustris (50%)
2 1596 bp 58.96 3.45 100.56
SCNpilot_cont_750_p_scaffold_80187 3 1059 bp 57.32 4.96 100.57
SCNpilot_cont_750_p_scaffold_80875
Species: GWC2_Pelobacteraceae_58_13_curated (50%)
2 1053 bp 67.43 2.61 100.57
SCNpilot_cont_750_p_scaffold_29426
Species: Achromobacter xylosoxidans (66.67%)
3 2270 bp 57.49 3.63 100.57
SCNpilot_cont_750_p_scaffold_37041
Species: Afipia felis (100%)
3 1906 bp 59.71 4.98 100.58
SCNpilot_cont_750_p_scaffold_48540
Class: Betaproteobacteria (66.67%)
3 1557 bp 66.99 4.50 100.58
SCNpilot_cont_750_p_scaffold_82687
Genus: Rhodococcus (100%)
3 1035 bp 67.15 3.86 100.58
SCNpilot_cont_750_p_scaffold_57179
Species: Microbacterium azadirachtae (100%)
2 1375 bp 70.55 5.45 100.58
SCNpilot_cont_750_p_scaffold_68377
Species: Microbacterium mangrovi (50%)
2 1199 bp 74.23 3.75 100.58
SCNpilot_cont_750_p_scaffold_49307
Order: Burkholderiales (66.67%)
3 1539 bp 67.12 4.87 100.59
SCNpilot_cont_750_p_scaffold_33832
Genus: Sphingomonas (66.67%)
3 2046 bp 64.42 3.30 100.59
SCNpilot_cont_750_p_scaffold_83994
Order: Rhizobiales (66.67%)
3 1023 bp 57.18 3.18 100.59
SCNpilot_cont_750_p_scaffold_84269
Species: Microbacterium ginsengisoli (100%)
3 1020 bp 70.59 3.43 100.59
SCNpilot_cont_750_p_scaffold_84210 3 1020 bp 58.04 4.90 100.59
SCNpilot_cont_750_p_scaffold_84223
Species: Bradyrhizobium sp. LTSP849 (50%)
2 1020 bp 68.33 4.17 100.59
SCNpilot_cont_750_p_scaffold_58308 2 1354 bp 30.87 43.39 100.59
SCNpilot_cont_750_p_scaffold_58327
Order: Rhodospirillales (66.67%)
3 1354 bp 76.44 2.95 100.59
SCNpilot_cont_750_p_scaffold_43440
Species: RLO_Betaproteobacteria_65_14 (100%)
2 1691 bp 56.48 4.44 100.59
SCNpilot_cont_750_p_scaffold_34410
Species: Bradyrhizobium sp. YR681 (50%)
2 2019 bp 65.48 29.59 100.59
Displaying items 58251-58300 of 58943 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.