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SCNpilot_cont_750_p_UNK

In projects: SCNPILOT_CONT_750_P

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 8.68 Longest contig: 77.80 Kbp Bin length: 113.12 Mbp GC content: 56.02 %
Contigs count: 58943 Features count: 154683 rRNAs count: 22 tRNAs count: 459

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 20
Displaying items 58401-58450 of 58943 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_750_p_scaffold_64182 3 1259 bp 57.19 6.95 100.79
SCNpilot_cont_750_p_scaffold_64356 3 1256 bp 50.80 4.58 100.80
SCNpilot_cont_750_p_scaffold_50717
Species: Acetobacteraceae bacterium AT-5844 (50%)
2 1506 bp 73.97 3.15 100.80
SCNpilot_cont_750_p_scaffold_64927
Species: Caldilinea aerophila (50%)
2 1247 bp 65.52 4.01 100.80
SCNpilot_cont_750_p_scaffold_26081 3 2488 bp 63.46 8.94 100.80
SCNpilot_cont_750_p_scaffold_74684
Species: Afipia felis (100%)
2 1119 bp 63.36 4.92 100.80
SCNpilot_cont_750_p_scaffold_65966 2 1232 bp 48.46 6.09 100.81
SCNpilot_cont_750_p_scaffold_19740
Species: Burkholderia cenocepacia (66.67%)
3 3077 bp 66.75 4.06 100.81
SCNpilot_cont_750_p_scaffold_75671
Species: Leifsonia aquatica (50%)
2 1107 bp 72.90 3.61 100.81
SCNpilot_cont_750_p_scaffold_52221
Species: Mycobacterium arupense (100%)
2 1473 bp 71.83 2.72 100.82
SCNpilot_cont_750_p_scaffold_26795
Species: Delftia acidovorans (66.67%)
3 2434 bp 67.34 38.62 100.82
SCNpilot_cont_750_p_scaffold_76771
Species: Mesorhizobium plurifarium (50%)
2 1095 bp 62.83 2.51 100.82
SCNpilot_cont_750_p_scaffold_59351
Species: Novosphingobium sp. MD-1 (100%)
2 1336 bp 67.29 2.62 100.82
SCNpilot_cont_750_p_scaffold_77281
Species: Novosphingobium sp. MD-1 (100%)
2 1089 bp 67.77 2.75 100.83
SCNpilot_cont_750_p_scaffold_77321
Species: Corynebacterium halotolerans (50%)
2 1089 bp 57.94 2.75 100.83
SCNpilot_cont_750_p_scaffold_67732
Species: Acidiphilium cryptum (50%)
2 1208 bp 60.84 9.93 100.83
SCNpilot_cont_750_p_scaffold_53344
Species: Alicycliphilus sp. B1 (50%)
2 1449 bp 62.39 5.00 100.83
SCNpilot_cont_750_p_scaffold_60068
Species: Nitrolancea hollandica (50%)
2 1324 bp 58.46 3.78 100.83
SCNpilot_cont_750_p_scaffold_60436
Class: Alphaproteobacteria (66.67%)
3 1318 bp 52.66 4.17 100.84
SCNpilot_cont_750_p_scaffold_68758
Species: Williamsia sp. D3 (66.67%)
3 1193 bp 66.55 2.93 100.84
SCNpilot_cont_750_p_scaffold_60791
Species: Tistrella mobilis (50%)
2 1312 bp 62.73 8.00 100.84
SCNpilot_cont_750_p_scaffold_60843
Species: Azospirillum lipoferum (50%)
2 1312 bp 61.43 6.48 100.84
SCNpilot_cont_750_p_scaffold_44262
Species: Acidisphaera rubrifaciens (100%)
3 1666 bp 65.73 3.75 100.84
SCNpilot_cont_750_p_scaffold_69007 2 1190 bp 45.21 5.04 100.84
SCNpilot_cont_750_p_scaffold_69525
Species: Afipia felis (100%)
2 1184 bp 66.39 2.53 100.85
SCNpilot_cont_750_p_scaffold_55139
Species: Afipia felis (100%)
2 1413 bp 62.85 4.60 100.85
SCNpilot_cont_750_p_scaffold_37779
Order: Rhizobiales (100%)
3 1877 bp 65.32 8.12 100.85
SCNpilot_cont_750_p_scaffold_4818
Class: Betaproteobacteria (50%)
10 9706 bp 61.23 10.90 100.86
SCNpilot_cont_750_p_scaffold_25256
Class: Actinobacteria (50%)
4 2546 bp 61.31 5.11 100.86
SCNpilot_cont_750_p_scaffold_71634
Species: uncultured bacterium (50%)
2 1157 bp 64.13 39.11 100.86
SCNpilot_cont_750_p_scaffold_35537 3 1966 bp 58.65 5.60 100.87
SCNpilot_cont_750_p_scaffold_28893
Species: RIFOXYA1_FULL_Rhodanobacter_67_6_curated (100%)
2 2302 bp 68.55 20.42 100.87
SCNpilot_cont_750_p_scaffold_83660
Species: Streptomyces cattleya (100%)
2 1026 bp 69.59 1.95 100.88
SCNpilot_cont_750_p_scaffold_73743
Species: RBG_16_RIF_WS3X_71_46_curated (50%)
2 1130 bp 71.42 2.65 100.89
SCNpilot_cont_750_p_scaffold_84868
Species: mine drainage metagenome (50%)
2 1014 bp 64.40 2.47 100.89
SCNpilot_cont_750_p_scaffold_43622
Species: Stenotrophomonas maltophilia (50%)
2 1686 bp 57.35 3.86 100.89
SCNpilot_cont_750_p_scaffold_85271
Species: Chondrus crispus (50%)
2 1011 bp 54.60 8.41 100.89
SCNpilot_cont_750_p_scaffold_34530
Species: Phaeospirillum molischianum (50%)
2 2013 bp 70.49 4.35 100.89
SCNpilot_cont_750_p_scaffold_59062
Order: Rhodospirillales (50%)
4 1341 bp 71.59 2.61 100.90
SCNpilot_cont_750_p_scaffold_53653
Species: Alicycliphilus sp. B1 (50%)
2 1442 bp 68.03 5.20 100.90
SCNpilot_cont_750_p_scaffold_60110
Species: Beutenbergia cavernae (50%)
2 1323 bp 73.54 3.78 100.91
SCNpilot_cont_750_p_scaffold_76301
Species: Bradyrhizobium diazoefficiens (50%)
2 1100 bp 58.18 1.82 100.91
SCNpilot_cont_750_p_scaffold_38063
Species: Pusillimonas sp. T7-7 (100%)
3 1867 bp 64.01 4.02 100.91
SCNpilot_cont_750_p_scaffold_25671
Order: Chromatiales (50%)
4 2518 bp 66.04 4.67 100.91
SCNpilot_cont_750_p_scaffold_15556
Order: Rhizobiales (60%)
5 3710 bp 57.41 8.15 100.92
SCNpilot_cont_750_p_scaffold_77177
Species: Bradyrhizobium sp. DFCI-1 (50%)
2 1091 bp 60.40 3.21 100.92
SCNpilot_cont_750_p_scaffold_54876
Species: Pseudogymnoascus destructans (50%)
2 1418 bp 57.05 6.52 100.92
SCNpilot_cont_750_p_scaffold_35739 3 1959 bp 53.45 8.04 100.92
SCNpilot_cont_750_p_scaffold_61613
Species: Methylobacterium aquaticum (50%)
2 1299 bp 62.20 4.23 100.92
SCNpilot_cont_750_p_scaffold_42399 4 1721 bp 47.36 6.10 100.93
Displaying items 58401-58450 of 58943 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.