ggKbase home page

SCNpilot_cont_750_bf_scaffold_9014

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_9014_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..412)
DNA (411bp) protein (137aa)
General secretion pathway protein D n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W358_9GAMM
General secretion pathway protein D {ECO:0000313|EMBL:EIL93899.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
general secretion pathway protein D
SCNpilot_cont_750_bf_scaffold_9014_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(416..1135)
DNA (720bp) protein (240aa)
Uncharacterized protein n=2 Tax=Rhodanobacter denitrificans RepID=M4NM97_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90778.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_9014_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1685..2842)
DNA (1158bp) protein (386aa)
Tfp pilus assembly protein PilN n=1 Tax=Rhodanobacter denitrificans RepID=M4NIK2_9GAMM rbh
Tfp pilus assembly protein PilN rbh
Tfp pilus assembly protein PilN {ECO:0000313|EMBL:AGG90780.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_9014_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2839..3528)
DNA (690bp) protein (230aa)
Type II secretion system protein K n=1 Tax=Rhodanobacter denitrificans RepID=I4WMR2_9GAMM
type II secretory pathway, component PulK
Type II secretion system protein K {ECO:0000256|PIRNR:PIRNR002786}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_9014_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3632..4294)
DNA (663bp) protein (221aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NL31_9GAMM
prepilin-type N-terminal cleavage/methylation domain-containing protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_750_bf_scaffold_9014_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4291..4824)
DNA (534bp) protein (178aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMR4_9GAMM
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGG90783.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_9014_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4821..5231)
DNA (411bp) protein (137aa)
General secretion pathway protein H n=1 Tax=Rhodanobacter denitrificans RepID=I4WMR5_9GAMM
general secretion pathway protein H
General secretion pathway protein H {ECO:0000313|EMBL:AGG90784.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_9014_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5387..5521)
DNA (135bp) protein (45aa)
General secretion pathway protein G n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGR4_9GAMM
General secretion pathway protein G {ECO:0000313|EMBL:EIL98655.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
general secretion pathway protein G
SCNpilot_cont_750_bf_scaffold_9014_9
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5518..5856)
DNA (339bp) protein (113aa)
general secretion pathway protein G n=1 Tax=Dyella ginsengisoli RepID=UPI000345A671
General secretion pathway protein GspG {ECO:0000313|EMBL:AIF46598.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
general secretion pathway protein G; K02456 general secretion pathway protein G
SCNpilot_cont_750_bf_scaffold_9014_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5957..7102)
DNA (1146bp) protein (382aa)
General secretion pathway protein F n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGR5_9GAMM
General secretion pathway protein F {ECO:0000313|EMBL:EIL98656.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
general secretion pathway protein F
SCNpilot_cont_750_bf_scaffold_9014_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7127..7681)
DNA (555bp) protein (185aa)
Type II secretion system protein E (GspE) n=1 Tax=Rhodanobacter denitrificans RepID=M4NL36_9GAMM
type II secretion system protein E (GspE)
Type II secretion system protein E (GspE) {ECO:0000313|EMBL:AGG90787.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_9014_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7638..8801)
DNA (1164bp) protein (388aa)
Type II secretion system protein E (GspE) n=1 Tax=Rhodanobacter denitrificans RepID=M4NL36_9GAMM
type II secretion system protein E (GspE)
Type II secretion system protein E (GspE) {ECO:0000313|EMBL:AGG90787.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_9014_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8857..9957)
DNA (1101bp) protein (367aa)
Uncharacterized protein (Fragment) n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W370_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL93911.1}; Flags: Fragment;; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
xadA; outer membrane protein
SCNpilot_cont_750_bf_scaffold_9014_14
Populus trichocarpa, Populus, Malpighiales, rosids, Streptophyta, Viridiplantae

Not on your lists

comp(10279..10998)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Populus trichocarpa RepID=B9HS46_POPTR
Uncharacterized protein {ECO:0000313|EMBL:EEE87821.2}; TaxID=3694 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus.;" source="Populus trichocarpa (Western balsam poplar) (Populus balsamifera; subsp. trichocarpa).;"
Serine/threonine protein kinase
SCNpilot_cont_750_bf_scaffold_9014_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11391..11795)
DNA (405bp) protein (135aa)
Peptidase M4, thermolysin n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VQB5_9GAMM
Peptidase M4, thermolysin {ECO:0000313|EMBL:EIL89406.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Zinc metalloprotease (elastase)
SCNpilot_cont_750_bf_scaffold_9014_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11792..12889)
DNA (1098bp) protein (366aa)
Peptidase M4, thermolysin n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VQB5_9GAMM rbh
Peptidase M4, thermolysin {ECO:0000313|EMBL:EIL89406.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Zinc metalloprotease (elastase)
SCNpilot_cont_750_bf_scaffold_9014_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13092..13889
DNA (798bp) protein (266aa)
Mg-dependent DNase (EC:3.1.21.-) rbh
Mg-dependent DNase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGF0_9GAMM rbh
Mg-dependent DNase {ECO:0000313|EMBL:EIL98541.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_cont_750_bf_scaffold_9014_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13952..14488)
DNA (537bp) protein (179aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
pseudouridine synthase family protein (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFC5_9GAMM
SCNpilot_cont_750_bf_scaffold_9014_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14510..15490)
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMS1_9GAMM
putative methyltransferase
Putative methyltransferase {ECO:0000313|EMBL:AGG90790.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_9014_20
Bacteriovorax sp. Seq25_V, Bacteriovorax, Bdellovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15616..16626)
DNA (1011bp) protein (337aa)
S-(hydroxymethyl)glutathione dehydrogenase {ECO:0000256|RuleBase:RU362016}; EC=1.1.1.284 {ECO:0000256|RuleBase:RU362016};; TaxID=1201288 species="Bacteria; Proteobacteria; Deltaproteobacteria; Bdellovibrionales; Bacteriovoracaceae; Bacteriovorax.;" source="Bacteriovorax sp. Seq25_V.;"
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
S-(Hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase n=1 Tax=Bacteriovorax sp. Seq25_V RepID=T0R4K3_9DELT
SCNpilot_cont_750_bf_scaffold_9014_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16697..17617)
DNA (921bp) protein (307aa)
Transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2Q0_9GAMM rbh
Transcriptional regulator {ECO:0000313|EMBL:EIL93741.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
transcriptional regulator rbh
SCNpilot_cont_750_bf_scaffold_9014_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17725..17922
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NIR1_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90794.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_9014_23
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18024..18968
DNA (945bp) protein (315aa)
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPI3_9GAMM
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein {ECO:0000313|EMBL:EIL89124.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative oxidoreductase, aryl-alcohol dehydrogenase like protein
SCNpilot_cont_750_bf_scaffold_9014_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18990..19193)
DNA (204bp) protein (68aa)
Isocitrate dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WMS8_9GAMM
isocitrate dehydrogenase, NADP-dependent, monomeric type
Isocitrate dehydrogenase, NADP-dependent, monomeric type {ECO:0000313|EMBL:AGG90797.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_9014_25
unknown

Not on your lists

19513..19947
DNA (435bp) protein (145aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_9014_26
unknown

Not on your lists

19984..20097
DNA (114bp) protein (38aa)

This feature has no annotations

Displaying 26 items

View Taxonomy