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SCNpilot_cont_750_bf_UNK

In projects: SCNPILOT_CONT_750_BF

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 12.12 Longest contig: 237.87 Kbp Bin length: 61.05 Mbp GC content: 60.34 %
Contigs count: 22393 Features count: 76023 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 17 / 38 MC: 15
Displaying items 21851-21900 of 22393 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_750_bf_scaffold_5479
Class: Actinobacteria (66.67%)
3 4942 bp 68.21 5.87 100.34
SCNpilot_cont_750_bf_scaffold_18909
Order: Actinomycetales (66.67%)
3 2027 bp 72.32 4.32 100.35
SCNpilot_cont_750_bf_scaffold_36745 2 1145 bp 64.98 2.84 100.35
SCNpilot_cont_750_bf_scaffold_36756
Species: Sphingomonas wittichii (50%)
2 1145 bp 61.57 1.31 100.35
SCNpilot_cont_750_bf_scaffold_16486
Species: Hydrogenophaga sp. PBC (66.67%)
3 2281 bp 58.22 7.34 100.35
SCNpilot_cont_750_bf_scaffold_36969
Species: Dyella jiangningensis (50%)
2 1139 bp 64.27 1.00 100.35
SCNpilot_cont_750_bf_scaffold_20224
Species: Afipia felis (100%)
4 2559 bp 68.54 15.53 100.35
SCNpilot_cont_750_bf_scaffold_37203
Species: Candidatus Caedibacter acanthamoebae (100%)
2 1133 bp 42.19 1.77 100.35
SCNpilot_cont_750_bf_scaffold_28615
Species: Rhodopseudomonas palustris (50%)
4 1414 bp 64.29 7.78 100.35
SCNpilot_cont_750_bf_scaffold_33375
Genus: Methylobacterium (66.67%)
3 1973 bp 66.35 3.55 100.35
SCNpilot_cont_750_bf_scaffold_37523
Species: Leifsonia aquatica (50%)
2 1124 bp 71.62 2.22 100.36
SCNpilot_cont_750_bf_scaffold_37841
Genus: Bradyrhizobium (66.67%)
3 1115 bp 67.26 6.50 100.36
SCNpilot_cont_750_bf_scaffold_23953
Species: BJP_08E140C01_Actinomycetales_67_18 (66.67%)
3 1650 bp 75.03 4.85 100.36
SCNpilot_cont_750_bf_scaffold_38439
Species: Brevundimonas diminuta (50%)
2 1097 bp 64.72 2.96 100.37
SCNpilot_cont_750_bf_scaffold_38547
Species: R_Alphaproteobacteria_66_14 (100%)
2 1094 bp 66.27 2.29 100.37
SCNpilot_cont_750_bf_scaffold_38664
Species: Herbaspirillum sp. TSA66 (50%)
2 1091 bp 62.88 2.29 100.37
SCNpilot_cont_750_bf_scaffold_20281
Species: Microbacterium ginsengisoli (100%)
2 1907 bp 68.48 5.37 100.37
SCNpilot_cont_750_bf_scaffold_29950
Species: Microbacterium azadirachtae (100%)
3 1360 bp 69.56 3.31 100.37
SCNpilot_cont_750_bf_scaffold_17487
Species: Polymorphum gilvum (50%)
2 2170 bp 68.89 5.07 100.37
SCNpilot_cont_750_bf_scaffold_24426
Species: Microbacterium sp. C448 (50%)
2 1620 bp 72.04 6.33 100.37
SCNpilot_cont_750_bf_scaffold_30265
Species: BJP_08E140C01_Actinomycetales_67_18 (100%)
2 1348 bp 71.74 2.41 100.37
SCNpilot_cont_750_bf_scaffold_30267
Genus: Mesorhizobium (50%)
4 1348 bp 65.28 4.64 100.37
SCNpilot_cont_750_bf_scaffold_15313
Species: alpha proteobacterium U9-1i (75%)
4 2421 bp 63.49 18.59 100.37
SCNpilot_cont_750_bf_scaffold_24586
Genus: Achromobacter (66.67%)
3 1611 bp 69.03 6.98 100.37
SCNpilot_cont_750_bf_scaffold_30436
Species: Oligotropha carboxidovorans (66.67%)
3 1342 bp 64.75 3.35 100.37
SCNpilot_cont_750_bf_scaffold_39289
Species: Streptosporangium roseum (50%)
2 1073 bp 70.36 1.00 100.37
SCNpilot_cont_750_bf_scaffold_38969
Species: Microbacterium mangrovi (66.67%)
3 1599 bp 69.67 31.27 100.37
SCNpilot_cont_750_bf_scaffold_15547
Species: Bradyrhizobium elkanii (50%)
2 2391 bp 63.66 3.97 100.38
SCNpilot_cont_750_bf_scaffold_24928
Species: Leifsonia xyli (66.67%)
3 1593 bp 73.07 3.14 100.38
SCNpilot_cont_750_bf_scaffold_39843
Species: Mesorhizobium loti (50%)
2 1058 bp 66.73 4.02 100.38
SCNpilot_cont_750_bf_scaffold_31021 3 1321 bp 72.37 2.65 100.38
SCNpilot_cont_750_bf_scaffold_18139
Species: Novosphingobium sp. MD-1 (100%)
3 2104 bp 66.63 2.14 100.38
SCNpilot_cont_750_bf_scaffold_40179
Species: BJP_08E140C01_Actinomycetales_70_11 (100%)
2 1049 bp 69.97 3.34 100.38
SCNpilot_cont_750_bf_scaffold_21221
Class: Alphaproteobacteria (66.67%)
3 1835 bp 63.81 3.95 100.38
SCNpilot_cont_750_bf_scaffold_40408
Species: Rhodanobacter denitrificans (50%)
2 1043 bp 66.16 1.92 100.38
SCNpilot_cont_750_bf_scaffold_18096
Genus: Mycobacterium (80%)
5 3123 bp 73.07 41.63 100.38
SCNpilot_cont_750_bf_scaffold_21419
Species: Luteibacter yeojuensis (50%)
2 1820 bp 66.70 2.20 100.38
SCNpilot_cont_750_bf_scaffold_18327
Genus: Rhodanobacter (50%)
4 2857 bp 69.23 10.94 100.38
SCNpilot_cont_750_bf_scaffold_25769
Species: Devosia geojensis (100%)
2 1551 bp 54.61 4.03 100.39
SCNpilot_cont_750_bf_scaffold_40828
Species: Desulfovibrio vulgaris (50%)
2 1031 bp 51.31 2.91 100.39
SCNpilot_cont_750_bf_scaffold_40960
Species: marine sediment metagenome (50%)
2 1028 bp 65.18 2.92 100.39
SCNpilot_cont_750_bf_scaffold_14301
Species: Nitrobacter hamburgensis (100%)
3 2558 bp 67.32 3.52 100.39
SCNpilot_cont_750_bf_scaffold_41216
Species: Rhodopseudomonas palustris (50%)
2 1022 bp 65.56 16.88 100.39
SCNpilot_cont_750_bf_scaffold_41218
Species: Frankia sp. EuI1c (50%)
2 1022 bp 72.70 33.02 100.39
SCNpilot_cont_750_bf_scaffold_32276
Species: termite gut metagenome (50%)
2 1276 bp 71.63 1.96 100.39
SCNpilot_cont_750_bf_scaffold_21885
Species: Legionella drancourtii (50%)
2 1784 bp 43.44 3.50 100.39
SCNpilot_cont_750_bf_scaffold_41450
Species: RHI_Gammaproteobacteria_63_22 (50%)
2 1016 bp 68.41 2.46 100.39
SCNpilot_cont_750_bf_scaffold_22030
Order: Xanthomonadales (100%)
3 1775 bp 69.07 1.41 100.39
SCNpilot_cont_750_bf_scaffold_26396
Species: Scytonema millei (50%)
2 1518 bp 67.98 3.13 100.40
SCNpilot_cont_750_bf_scaffold_22119
Species: Microbacterium ginsengisoli (80%)
5 1769 bp 68.68 2.97 100.40
Displaying items 21851-21900 of 22393 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.