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SCNpilot_cont_750_bf_UNK

In projects: SCNPILOT_CONT_750_BF

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 12.12 Longest contig: 237.87 Kbp Bin length: 61.05 Mbp GC content: 60.34 %
Contigs count: 22393 Features count: 76023 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 17 / 38 MC: 15
Displaying items 21901-21950 of 22393 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_750_bf_scaffold_22163
Order: Rhodospirillales (66.67%)
3 1766 bp 66.82 3.40 100.40
SCNpilot_cont_750_bf_scaffold_32833
Species: Leifsonia aquatica (100%)
3 1258 bp 71.38 3.97 100.40
SCNpilot_cont_750_bf_scaffold_26697
Species: Rhodopseudomonas palustris (50%)
2 1503 bp 59.55 3.83 100.40
SCNpilot_cont_750_bf_scaffold_42040
Species: Nitratireductor aquibiodomus (50%)
2 1001 bp 66.63 3.50 100.40
SCNpilot_cont_750_bf_scaffold_19359
Species: Leifsonia xyli (50%)
2 1987 bp 73.43 5.79 100.40
SCNpilot_cont_750_bf_scaffold_27220
Species: Roseovarius nubinhibens (100%)
2 1479 bp 64.57 2.20 100.41
SCNpilot_cont_750_bf_scaffold_33994
Species: Rhodobacter sp. CACIA14H1 (66.67%)
3 1225 bp 65.31 2.45 100.41
SCNpilot_cont_750_bf_scaffold_18156
Order: Sphingomonadales (100%)
5 3905 bp 69.48 5.38 100.41
SCNpilot_cont_750_bf_scaffold_27545
Class: Actinobacteria (66.67%)
3 1464 bp 77.80 1.00 100.41
SCNpilot_cont_750_bf_scaffold_34195
Species: Streptomyces sp. AA4 (100%)
2 1219 bp 69.40 3.28 100.41
SCNpilot_cont_750_bf_scaffold_31532
Species: Microbacterium mangrovi (50%)
4 2390 bp 70.67 34.31 100.42
SCNpilot_cont_750_bf_scaffold_35086 3 1192 bp 61.41 4.61 100.42
SCNpilot_cont_750_bf_scaffold_35217
Species: Afipia sp. 1NLS2 (100%)
2 1189 bp 62.41 8.41 100.42
SCNpilot_cont_750_bf_scaffold_10356
Species: Leifsonia aquatica (57.14%)
7 4723 bp 73.00 3.23 100.42
SCNpilot_cont_750_bf_scaffold_28647
Species: Parvibaculum lavamentivorans (50%)
2 1413 bp 69.43 1.42 100.43
SCNpilot_cont_750_bf_scaffold_24051
Order: Micrococcales (66.67%)
3 1643 bp 74.44 37.74 100.43
SCNpilot_cont_750_bf_scaffold_24094
Species: Castellaniella defragrans (100%)
3 1640 bp 71.28 1.83 100.43
SCNpilot_cont_750_bf_scaffold_36209
Species: Nitrobacter sp. Nb-311A (50%)
2 1159 bp 65.83 2.59 100.43
SCNpilot_cont_750_bf_scaffold_37007
Species: Leifsonia aquatica (100%)
2 1138 bp 70.56 3.95 100.44
SCNpilot_cont_750_bf_scaffold_21601
Species: Hyphomicrobium denitrificans (100%)
2 1807 bp 62.37 2.63 100.44
SCNpilot_cont_750_bf_scaffold_13302
Class: Actinobacteria (50%)
4 2706 bp 70.69 4.34 100.44
SCNpilot_cont_750_bf_scaffold_30211
Genus: Microbacterium (100%)
3 1350 bp 67.33 4.81 100.44
SCNpilot_cont_750_bf_scaffold_21717
Genus: Rhizobium (100%)
3 1798 bp 70.41 3.20 100.45
SCNpilot_cont_750_bf_scaffold_30294
Species: BJP_08E140C01_Actinomycetales_70_11 (50%)
4 1347 bp 73.87 1.48 100.45
SCNpilot_cont_750_bf_scaffold_25460
Genus: Bradyrhizobium (100%)
3 1565 bp 65.75 4.47 100.45
SCNpilot_cont_750_bf_scaffold_37756
Order: Rhizobiales (66.67%)
3 1117 bp 66.52 2.01 100.45
SCNpilot_cont_750_bf_scaffold_5633
Species: Afipia felis (60%)
5 5585 bp 62.22 17.19 100.45
SCNpilot_cont_750_bf_scaffold_19131
Species: Starkeya novella (100%)
2 2007 bp 60.84 5.73 100.45
SCNpilot_cont_750_bf_scaffold_33321
Species: Nitrobacter sp. Nb-311A (50%)
2 1774 bp 67.19 13.95 100.45
SCNpilot_cont_750_bf_scaffold_25779
Species: Mycobacterium rufum (50%)
2 1550 bp 71.68 1.61 100.45
SCNpilot_cont_750_bf_scaffold_30863
Species: Sphingomonas sp. WHSC-8 (50%)
2 1326 bp 62.37 3.02 100.45
SCNpilot_cont_750_bf_scaffold_31040
Species: Nitrobacter hamburgensis (50%)
2 1320 bp 62.35 2.65 100.46
SCNpilot_cont_750_bf_scaffold_31356
Species: Legionella longbeachae (50%)
2 1308 bp 42.43 1.53 100.46
SCNpilot_cont_750_bf_scaffold_9669
Domain: Bacteria (83.33%)
6 4136 bp 61.90 9.01 100.46
SCNpilot_cont_750_bf_scaffold_26430
Species: Strigamia maritima (50%)
2 1517 bp 63.28 1.00 100.46
SCNpilot_cont_750_bf_scaffold_26489
Species: Caulobacter sp. K31 (50%)
2 1514 bp 64.86 3.30 100.46
SCNpilot_cont_750_bf_scaffold_15683
Species: Sphingomonas paucimobilis (50%)
2 2377 bp 62.22 139.46 100.46
SCNpilot_cont_750_bf_scaffold_31709
Species: Legionella pneumophila (100%)
2 1296 bp 34.80 4.44 100.46
SCNpilot_cont_750_bf_scaffold_31964
Phylum: Proteobacteria (66.67%)
3 1287 bp 57.50 4.27 100.47
SCNpilot_cont_750_bf_scaffold_26981
Species: Nocardia brasiliensis (50%)
2 1490 bp 61.21 12.08 100.47
SCNpilot_cont_750_bf_scaffold_14365
Species: BJP_IG2158_Methylococcales_50_91 (66.67%)
3 2547 bp 53.95 87.46 100.47
SCNpilot_cont_750_bf_scaffold_23207 6 1696 bp 63.27 2.95 100.47
SCNpilot_cont_750_bf_scaffold_9007
Class: Deltaproteobacteria (60%)
5 3598 bp 66.18 4.52 100.47
SCNpilot_cont_750_bf_scaffold_27381
Order: Rhizobiales (66.67%)
3 1472 bp 67.05 3.57 100.48
SCNpilot_cont_750_bf_scaffold_16268
Species: Microbacterium mangrovi (75%)
4 2305 bp 71.32 3.04 100.48
SCNpilot_cont_750_bf_scaffold_27506
Order: Pseudonocardiales (66.67%)
3 1466 bp 70.94 6.99 100.48
SCNpilot_cont_750_bf_scaffold_40456
Species: Novosphingobium sp. MD-1 (66.67%)
3 1042 bp 65.83 3.12 100.48
SCNpilot_cont_750_bf_scaffold_23769
Species: Rhodopseudomonas palustris (66.67%)
3 1660 bp 62.71 5.87 100.48
SCNpilot_cont_750_bf_scaffold_27857
Species: RHI_Legionellales_35_11 (50%)
2 1451 bp 42.52 3.79 100.48
SCNpilot_cont_750_bf_scaffold_40653
Species: Legionella longbeachae (66.67%)
3 1036 bp 38.90 4.34 100.48
Displaying items 21901-21950 of 22393 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.