ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1132_2

Organism: SCNPILOT_EXPT_1000_BF_Sphingobacteriales_41_5

near complete RP 46 / 55 MC: 2 BSCG 42 / 51 MC: 1 ASCG 9 / 38
Location: comp(481..1029)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niabella soli DSM 19437 RepID=H1NUZ1_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 41.7
  • Coverage: 168.0
  • Bit_score: 121
  • Evalue 1.20e-24
Uncharacterized protein {ECO:0000313|EMBL:KIA94950.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 38.3
  • Coverage: 175.0
  • Bit_score: 123
  • Evalue 3.30e-25
RNA polymerase sigma-70 factor, Bacteroides expansion family 1 similarity KEGG
DB: KEGG
  • Identity: 36.3
  • Coverage: 182.0
  • Bit_score: 120
  • Evalue 6.30e-25

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedobacter kyungheensis → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 549
ATGAGTTGTGATACACTTGAAAGGCTCCGAAACGGAGATCATAAAGCCTTTGCCGAAATATACGGGGCATCGCATAAACGAGTATACTTTTATTTTTTAAAACTCGCAGGTGATGAATTTGTTGCAAAAGAACTCACTCAGAAAACCTTTATTAAGTTATGGCGATACCGAACGCAGGTTGCCCTTGAACTAAGTATAGACCAGCAAATATTTCAAAAGGCCCGGCAAATTTATATTGACTGGCTAAGACAGCAAGCAAGAAACCGCAGGTGCGTTGCATTGGAAGAAATACATGAAGTGCCTGCTGTGATTGAAGTAACCGCAATGAGCGAGCTTAGGCAGGCATTAAATCATCTTTCCCCGAAAAGAAAAAAAGTTTTTGAACTCAGGCATATTTATGGGTATTCGTACAAAGAAATTGCAGAGCTTCTGAATATTTCCGTGAGAACCGTTGACAATCACCTTCTTAAGGCCACAGCCCAGCTACGCAAGGTCTTTAATATCTATAGCGGTATCGGCATCATCCTACTCACTTCGGCTCAAGCATAA
PROTEIN sequence
Length: 183
MSCDTLERLRNGDHKAFAEIYGASHKRVYFYFLKLAGDEFVAKELTQKTFIKLWRYRTQVALELSIDQQIFQKARQIYIDWLRQQARNRRCVALEEIHEVPAVIEVTAMSELRQALNHLSPKRKKVFELRHIYGYSYKEIAELLNISVRTVDNHLLKATAQLRKVFNIYSGIGIILLTSAQA*