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SCNpilot_cont_500_bf_scaffold_996_8

Organism: SCNPILOT_CONT_300_BF_Sphingomonadales_65_9_partial

near complete RP 42 / 55 MC: 2 BSCG 41 / 51 ASCG 12 / 38
Location: 5680..5967

Top 3 Functional Annotations

Value Algorithm Source
conjugal transfer protein TrbD n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003703556 similarity UNIREF
DB: UNIREF100
  • Identity: 75.8
  • Coverage: 95.0
  • Bit_score: 156
  • Evalue 1.70e-35
Conjugal transfer protein TrbD {ECO:0000313|EMBL:KFD30078.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 77.4
  • Coverage: 93.0
  • Bit_score: 157
  • Evalue 1.10e-35
putative conjugal transfer TrbD transmembrane protein; K03198 type IV secretion system protein VirB3 similarity KEGG
DB: KEGG
  • Identity: 76.3
  • Coverage: 93.0
  • Bit_score: 154
  • Evalue 1.60e-35

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Taxonomy

Sphingobium yanoikuyae → Sphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 288
ATGACCGGCGGGGGCGCCTATAGTCAGGCGGGACATCTCGACGGGTTCGAGGTGCCGCTTCACCGATCTCTGACCGAACCCATCCTGCTCGGTGGCGCGCCGCGCGGGGTCGCGATCATCAACGGCACGATCGCGGCCGCGCTCGGCCTCGGCCTCCAGCAATGGATTGCGGGGCTCGTGGTCTGGGCGGTCGGGCATACGCTGGCGGTTTTCGCAGCGAAGCGCGACCCGGACTTCATGCCGGTGCTTGCCCGTCATCTGCGCCAGAAAGGTCATCTCGCATGCTGA
PROTEIN sequence
Length: 96
MTGGGAYSQAGHLDGFEVPLHRSLTEPILLGGAPRGVAIINGTIAAALGLGLQQWIAGLVVWAVGHTLAVFAAKRDPDFMPVLARHLRQKGHLAC*