ggKbase home page

SCNpilot_cont_500_bf_scaffold_92_2

Organism: SCNPILOT_EXPT_750_P_Variovorax_66_42

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(1221..1847)

Top 3 Functional Annotations

Value Algorithm Source
Variovorax paradoxus strain MEDvA23 contig_10, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35397.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.2
  • Coverage: 208.0
  • Bit_score: 388
  • Evalue 6.30e-105
id=4023762 bin=GWB1_Spirochaetes_59_5 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes similarity UNIREF
DB: UNIREF100
  • Identity: 33.7
  • Coverage: 196.0
  • Bit_score: 93
  • Evalue 2.30e-16

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 627
GTGCGTCTGCTGATCGACGTCGACGCGCTTTGCAAGCTGGCGCATTGGGGGCTTCTCGAGGAGATCCCATCGTTGATGGGTATCCCGCTGCAAGAGTGCACCACGCTCGCCTCGTCGAAATACCGGGCCATCAAGGCAAAGAGCAAGCTCGACGGGCGGGTGTTTCACGCAGTCGAAGCGGCCGACCGTGTGCTCGAAGCTATCGCCTTGATGCAGGCGCCGATGGAGCCCGCGAGCCAAAGCCTTGGGGATTTCGAAAACGTGTTGGGCATCGACGCTGGCGAGGCGGTGCTGCTCGCATCGCTCGTGGCAGCGCCGGATACACGGCTGCTGACGGGAGACAAGCGGGCGCTGCGCGCGCTCGCAGCGCTACCGCCTGAAGCACGTGAACCGTTTCTTGGCCGAGTAATCTGCGTGGAACGAATCATTGAGGCAGGGCTGAACCAGTGGGGGTTGGACGTGCTTCGATCCAAGGTGTGTCCTTGGAAGAAGATCGACGTTGCCGTGAACATCATCATGGGGAGTCGTTGCGACGCAGGAGAGGCCTCGGTCCGGGAGGCGCTCGCCTCTTACATCGGCGAGCTGACGTCGCTGTGCGATCCCTCGCTCATCTGCGAGAAGCTCTGA
PROTEIN sequence
Length: 209
VRLLIDVDALCKLAHWGLLEEIPSLMGIPLQECTTLASSKYRAIKAKSKLDGRVFHAVEAADRVLEAIALMQAPMEPASQSLGDFENVLGIDAGEAVLLASLVAAPDTRLLTGDKRALRALAALPPEAREPFLGRVICVERIIEAGLNQWGLDVLRSKVCPWKKIDVAVNIIMGSRCDAGEASVREALASYIGELTSLCDPSLICEKL*