ggKbase home page

SCNpilot_cont_500_bf_scaffold_92

Search features with annotation key words

Displaying items 1-30 of 209 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_92_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..667
DNA (666bp) protein (222aa)
Putative phosphohydrolase n=1 Tax=Variovorax sp. CF313 RepID=J2KLZ3_9BURK
Putative phosphohydrolase {ECO:0000313|EMBL:EJL74098.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
metallophosphoesterase
SCNpilot_cont_500_bf_scaffold_92_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1221..1847)
DNA (627bp) protein (209aa)
Variovorax paradoxus strain MEDvA23 contig_10, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35397.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
id=4023762 bin=GWB1_Spirochaetes_59_5 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
SCNpilot_cont_500_bf_scaffold_92_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1851..2873)
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BL15 RepID=U8HY31_PSEAI
Variovorax paradoxus strain MEDvA23 contig_10, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35396.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_92_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3277..3921
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QVN4_9ZZZZ
Variovorax paradoxus strain MEDvA23 contig_10, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35395.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_92_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4059..5102
DNA (1044bp) protein (348aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IFN2_ANADE
Variovorax paradoxus strain MEDvA23 contig_10, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35394.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_92_6
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5212..5514
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q7WXG8_CUPNH
Uncharacterized protein {ECO:0000313|EMBL:EZQ20232.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_92_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5554..6054)
DNA (501bp) protein (167aa)
Putative copper-binding protein n=1 Tax=Variovorax sp. CF313 RepID=J2KIJ2_9BURK rbh
Putative copper-binding protein {ECO:0000313|EMBL:EJL80010.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
blue (type1) copper domain-containing protein
SCNpilot_cont_500_bf_scaffold_92_8
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6114..6857)
DNA (744bp) protein (248aa)
ABC transporter-like protein; K10004 glutamate/aspartate transport system ATP-binding protein [EC:3.6.3.-]
ABC transporter-related protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XWS6_LEPCP
ABC transporter-related protein {ECO:0000313|EMBL:ACB36275.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_cont_500_bf_scaffold_92_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6858..7547)
DNA (690bp) protein (230aa)
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Variovorax sp. CF313 RepID=J2TMZ2_9BURK rbh
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EJL80012.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
polar amino acid ABC transporter, inner membrane subunit; K10002 glutamate/aspartate transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_92_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7547..8284)
DNA (738bp) protein (246aa)
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Variovorax sp. CF313 RepID=J2L447_9BURK rbh
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EJL80013.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
polar amino acid ABC transporter, inner membrane subunit; K10003 glutamate/aspartate transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_92_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8342..9268)
DNA (927bp) protein (309aa)
Periplasmic component of amino acid ABC-type transporter/signal transduction system n=1 Tax=Variovorax sp. CF313 RepID=J3CWN9_9BURK rbh
Periplasmic component of amino acid ABC-type transporter/signal transduction system {ECO:0000313|EMBL:EJL80014.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
extracellular solute-binding protein family 3 rbh
SCNpilot_cont_500_bf_scaffold_92_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9291..10460)
DNA (1170bp) protein (390aa)
cystathionine beta-lyase; K01760 cystathionine beta-lyase [EC:4.4.1.8] rbh
Cystathionine beta-lyase/cystathionine gamma-synthase n=1 Tax=Variovorax sp. CF313 RepID=J2KIM1_9BURK rbh
Cystathionine beta-lyase/cystathionine gamma-synthase {ECO:0000313|EMBL:EJL80015.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_500_bf_scaffold_92_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10494..10946)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CX43_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL80016.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_92_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11043..11981
DNA (939bp) protein (313aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2TN17_9BURK rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL80017.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
LysR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_92_15
unknown

Not on your lists

comp(11992..12210)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_92_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12255..14690)
DNA (2436bp) protein (812aa)
Copper-transporting P-type ATPase {ECO:0000313|EMBL:AGU47886.1}; EC=3.6.3.4 {ECO:0000313|EMBL:AGU47886.1};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
copper-transporting P-type ATPase (EC:3.6.3.4) rbh
Copper-transporting P-type ATPase n=1 Tax=Variovorax paradoxus B4 RepID=T1X601_VARPD rbh
SCNpilot_cont_500_bf_scaffold_92_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14806..14997)
DNA (192bp) protein (64aa)
Copper chaperone n=1 Tax=Variovorax sp. CF313 RepID=J2L475_9BURK
Copper chaperone {ECO:0000313|EMBL:EJL80018.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
heavy metal transport/detoxification protein; K07213 copper chaperone
SCNpilot_cont_500_bf_scaffold_92_18
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15097..17112)
DNA (2016bp) protein (672aa)
UPI0003D069E4 related cluster n=1 Tax=unknown RepID=UPI0003D069E4
Multicopper oxidase {ECO:0000313|EMBL:ESZ20136.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
putative multicopper oxidase
SCNpilot_cont_500_bf_scaffold_92_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17297..17503)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CWQ3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL80019.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_500_bf_scaffold_92_20
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17548..18207)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WTY7_DELAC rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD41525.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
putative cytochrome c
SCNpilot_cont_500_bf_scaffold_92_21
unknown

Not on your lists

comp(18268..18684)
DNA (417bp) protein (139aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_92_22
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18743..19555)
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI0003665E75
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
SCNpilot_cont_500_bf_scaffold_92_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19605..19979)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CX45_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL80021.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_92_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20055..20546)
DNA (492bp) protein (164aa)
Putative copper-binding protein n=1 Tax=Variovorax sp. CF313 RepID=J2TN28_9BURK rbh
Putative copper-binding protein {ECO:0000313|EMBL:EJL80022.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative copper-binding protein
SCNpilot_cont_500_bf_scaffold_92_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20593..22008)
DNA (1416bp) protein (472aa)
Putative multicopper oxidase n=1 Tax=Variovorax sp. CF313 RepID=J2L493_9BURK rbh
Putative multicopper oxidase {ECO:0000313|EMBL:EJL80023.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
multicopper oxidase rbh
SCNpilot_cont_500_bf_scaffold_92_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22044..23468)
DNA (1425bp) protein (475aa)
Outer membrane protein n=1 Tax=Variovorax sp. CF313 RepID=J3CWQ6_9BURK rbh
Outer membrane protein {ECO:0000313|EMBL:EJL80024.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative copper resistance-like lipoprotein rbh
SCNpilot_cont_500_bf_scaffold_92_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23465..23836)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KIN9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL80025.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_92_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23953..24378)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CX48_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL80026.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_92_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24446..24841)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2TN32_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL80027.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_500_bf_scaffold_92_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25033..25716
DNA (684bp) protein (228aa)
Heavy metal response regulator n=1 Tax=Variovorax sp. CF313 RepID=J2L499_9BURK rbh
Heavy metal response regulator {ECO:0000313|EMBL:EJL80028.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
winged helix family two component heavy metal response transcriptional regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
Displaying items 1-30 of 209 in total

View Taxonomy