ggKbase home page

SCNpilot_cont_500_bf_scaffold_1608_16

Organism: SCNPILOT_CONT_300_BF_Mesorhizobium_65_39

near complete RP 48 / 55 MC: 3 BSCG 48 / 51 ASCG 11 / 38 MC: 1
Location: 20434..21345

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoH n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7XZI0_MESOW similarity UNIREF
DB: UNIREF100
  • Identity: 97.4
  • Coverage: 303.0
  • Bit_score: 577
  • Evalue 7.60e-162
  • rbh
RNA polymerase sigma-32 subunit RpoH; K03089 RNA polymerase sigma-32 factor similarity KEGG
DB: KEGG
  • Identity: 97.4
  • Coverage: 303.0
  • Bit_score: 577
  • Evalue 2.40e-162
  • rbh
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.4
  • Coverage: 303.0
  • Bit_score: 577
  • Evalue 1.10e-161

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Mesorhizobium sp. LNHC232B00 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 912
ATGGCCCAGTCATTACCCAGTATCGTTTCCGGTGAAGGCGGCCTCAGCCGCTACCTGGAAGAAATCCGTCGCTTTCCGATGCTTCAGCCGCAGGAAGAGTACATGCTCGCCAAGCGCTATGCCGAGCATCAGGACACTTCGGCCGCGCACAAGCTCGTCACCAGCCATTTGCGGCTCGTCGCCAAGATCGCCATGGGCTATCGCGGCTATGGCCTGCCGATCGGCGAGGTGATCTCGGAAGGCAATGTCGGCCTCATGCAAGCCGTCAAGAAGTTTGAGCCCGAGCGTGGTTTCCGCCTCGCCACCTATGCCATGTGGTGGATCAAGGCCTCGATCCAGGAGTACATCCTGCGCTCGTGGAGCCTGGTCAAGATGGGCACGACCGCCAACCAGAAGCGCCTGTTCTTCAACCTGCGCAAGGTGAAGGGCAAGATCCAGGCGCTCGACGATGGCGACCTGAAGCCCGACCAGATCACGGAGATCGCCACCCGGCTGAACGTCTCCGAGGACGAGGTCATCTCGATGAACCGCCGCCTTTCCGGCGACGCCTCGCTGAACGCCCCGATCCGGGCGACGGAAGGCGAATCCGGCGAGTGGCAGGACTGGCTGGTCGACGACCACGAAAGCCAGGAAGAGATGTTGATCGAGCAGGACGAACTCGAGAACCGGCGCGGCATGCTGTCCAGCGCGCTGGGCGTGCTCAACGACCGCGAACGGCGCATCTTCGAGGCGCGCCGCCTGGCCGAGGAGCCGCTGACGCTGGAAGAGCTTTCGGCCGAATTCGACATCAGCCGCGAGCGCGTGCGCCAGATCGAGGTGCGCGCCTTCGAGAAGGTGCAGGATGCCGTCAAGGCGGCCGCCAAGCGGCAGGCCCAGGCGCTGCGCACCATCGACGCTCAGCCGGCGGCCTGA
PROTEIN sequence
Length: 304
MAQSLPSIVSGEGGLSRYLEEIRRFPMLQPQEEYMLAKRYAEHQDTSAAHKLVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKKFEPERGFRLATYAMWWIKASIQEYILRSWSLVKMGTTANQKRLFFNLRKVKGKIQALDDGDLKPDQITEIATRLNVSEDEVISMNRRLSGDASLNAPIRATEGESGEWQDWLVDDHESQEEMLIEQDELENRRGMLSSALGVLNDRERRIFEARRLAEEPLTLEELSAEFDISRERVRQIEVRAFEKVQDAVKAAAKRQAQALRTIDAQPAA*