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SCNpilot_cont_500_bf_scaffold_4463_3

Organism: SCNPILOT_EXPT_300_BF_Stenotrophomonas_69_97

partial RP 32 / 55 MC: 2 BSCG 34 / 51 MC: 5 ASCG 10 / 38 MC: 1
Location: comp(1285..1842)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase principal sigma factor hrdB n=1 Tax=Stenotrophomonas maltophilia RA8 RepID=M5CXA0_STEMA similarity UNIREF
DB: UNIREF100
  • Identity: 72.4
  • Coverage: 181.0
  • Bit_score: 258
  • Evalue 4.80e-66
RNA polymerase sigma factor {ECO:0000313|EMBL:AKC85480.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.5
  • Coverage: 184.0
  • Bit_score: 260
  • Evalue 2.30e-66
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 72.4
  • Coverage: 181.0
  • Bit_score: 258
  • Evalue 1.50e-66

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Taxonomy

Pseudoxanthomonas suwonensis → Pseudoxanthomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 558
GTGGATACCGCCCTGCAAGCCCCGACCGACGAAGCGCTGATGCTGGCCTACGCCGAAGGCGACGGCGAAGCCTTCGCCGAGCTGTATGCGCGCCATCGCGCGCGGCTGTTCCACTACCTGCTGGGCCAACTGCGCGACCGCTCGCTGGCCGAGGAACTGTTCCAGGACGTGTGGCAGCGGATGATCCTGGCCCGCTCGCGCTGGAAGCCGGAGGCGAGCTTCGCCACCTGGCTGTTCCGCATCGCCCACAACCGCCTGAACGACCACTGGCGCGCGGCGCGGCACCGGCCCGCCGCCCCGGACGATGCCGACCAGCGCACCGCGCGCCTGGCCGACGCCTGCACCCCGGAACTGCTGGCCGACGAGCAGGACGAGCGGCTGCGGCTGCGCCAGGCCATGGCCGAATTGCCGCAGGAGCAGCAGGAAGTCCTGATCCTGCGCCTGGAGCAGGAACTGAGCCTGGAGGAGATCGGGCAGATCACCGGCGTGGGCCGGGAAACCGTCAAGTCGCGGCTGCGCTATGCGATGGACAAGCTGCGCGCGAGGTTGAGCGAATGA
PROTEIN sequence
Length: 186
VDTALQAPTDEALMLAYAEGDGEAFAELYARHRARLFHYLLGQLRDRSLAEELFQDVWQRMILARSRWKPEASFATWLFRIAHNRLNDHWRAARHRPAAPDDADQRTARLADACTPELLADEQDERLRLRQAMAELPQEQQEVLILRLEQELSLEEIGQITGVGRETVKSRLRYAMDKLRARLSE*