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SCNpilot_cont_500_bf_scaffold_4463

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4463_1
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..324)
DNA (324bp) protein (108aa)
Uncharacterized protein family UPF0029, Impact, N-terminal n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WSH3_PSEUU
hypothetical protein
Uncharacterized protein family UPF0029, Impact, N-terminal {ECO:0000313|EMBL:ADV27187.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
SCNpilot_cont_500_bf_scaffold_4463_2
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(395..1288)
DNA (894bp) protein (298aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E195BE
Uncharacterized protein {ECO:0000313|EMBL:AHY59361.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
putative proline/alanine-rich repetetive membrane anchored protein
SCNpilot_cont_500_bf_scaffold_4463_3
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1285..1842)
DNA (558bp) protein (186aa)
RNA polymerase principal sigma factor hrdB n=1 Tax=Stenotrophomonas maltophilia RA8 RepID=M5CXA0_STEMA
RNA polymerase sigma factor {ECO:0000313|EMBL:AKC85480.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_500_bf_scaffold_4463_4
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2000..4912
DNA (2913bp) protein (971aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D5A1E6 rbh
Membrane protein {ECO:0000313|EMBL:AHY59359.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
GAF sensor-containing diguanylate cyclase/phosphodiesterase rbh
SCNpilot_cont_500_bf_scaffold_4463_5
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5268..5861)
DNA (594bp) protein (198aa)
lysine decarboxylase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E4C986 rbh
Lysine decarboxylase {ECO:0000313|EMBL:AHY59358.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
putative lysine decarboxylase; K06966 rbh
SCNpilot_cont_500_bf_scaffold_4463_6
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5978..7414)
DNA (1437bp) protein (479aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] rbh
Dihydrolipoyl dehydrogenase n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KEQ3_STEMA rbh
SCNpilot_cont_500_bf_scaffold_4463_7
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7407..8603)
DNA (1197bp) protein (399aa)
sucB; Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC:2.3.1.61); K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] rbh
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; EC=2.3.1.61 {ECO:0000313|EMBL:CCH13305.1};; 2-oxoglutarate dehydrogenase complex component E2 {ECO:0000256|RuleBase:RU361138}; TaxID=1163399 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia D457.;"
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KQG5_STEMA rbh
SCNpilot_cont_500_bf_scaffold_4463_8
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8646..11477)
DNA (2832bp) protein (944aa)
2-oxoglutarate dehydrogenase {ECO:0000313|EMBL:AHY58523.1}; EC=1.2.4.2 {ECO:0000313|EMBL:AHY58523.1};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
sucA; 2-oxoglutarate dehydrogenase E1 component (EC:1.2.4.2); K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] rbh
2-oxoglutarate dehydrogenase E1 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F0F844 rbh
SCNpilot_cont_500_bf_scaffold_4463_9
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11656..12561)
DNA (906bp) protein (302aa)
acetyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031F5322 rbh
Acetyltransferase {ECO:0000313|EMBL:AHY58524.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
N-acetyltransferase GCN5
SCNpilot_cont_500_bf_scaffold_4463_10
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12558..14018)
DNA (1461bp) protein (487aa)
transcriptional regulator n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E8393F rbh
Transcriptional regulator {ECO:0000313|EMBL:AHY58525.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_4463_11
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14062..16314)
DNA (2253bp) protein (751aa)
Putative signaling protein n=1 Tax=Pseudomonas alcaligenes NBRC 14159 RepID=U3B7J9_PSEAC rbh
Putative signaling protein {ECO:0000313|EMBL:GAD62833.1}; TaxID=1215092 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes NBRC 14159.;"
GAF and PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase rbh
SCNpilot_cont_500_bf_scaffold_4463_12
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16815..18809)
DNA (1995bp) protein (665aa)
Transmembrane methyl-accepting chemotaxis protein I n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5K9R7_STEMA rbh
Transmembrane methyl-accepting chemotaxis protein I {ECO:0000313|EMBL:EQM72482.1}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
putative transmembrane methyl-accepting chemotaxis protein I rbh
SCNpilot_cont_500_bf_scaffold_4463_13
Xanthomonas vesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19139..20521)
DNA (1383bp) protein (461aa)
Adenylosuccinate lyase {ECO:0000313|EMBL:KHM94601.1}; EC=4.3.2.2 {ECO:0000313|EMBL:KHM94601.1};; TaxID=56460 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vesicatoria.;"
adenylosuccinate lyase (EC:4.3.2.2); K01756 adenylosuccinate lyase [EC:4.3.2.2] rbh
adenylosuccinate lyase n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI00036296C2 rbh
SCNpilot_cont_500_bf_scaffold_4463_14
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20675..21028
DNA (354bp) protein (118aa)
fumarate lyase; K01679 fumarate hydratase, class II [EC:4.2.1.2]
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
Fumarate hydratase class II n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WTX2_PSEUU
SCNpilot_cont_500_bf_scaffold_4463_15
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21025..22002
DNA (978bp) protein (326aa)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. graminis ART-Xtg29.;"
fumC; fumarate hydratase (EC:4.2.1.2); K01679 fumarate hydratase, class II [EC:4.2.1.2]
Fumarate hydratase class II n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8ZCV7_XANCT
SCNpilot_cont_500_bf_scaffold_4463_16
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22118..22327
DNA (210bp) protein (70aa)
Uncharacterized protein {ECO:0000313|EMBL:KFN45328.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
Putative uncharacterized protein id=2850546 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
SCNpilot_cont_500_bf_scaffold_4463_17
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22346..22780)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037E4871
hypothetical protein
Conserved hypothetical exported protein with low similarity to flagellar FliL protein {ECO:0000313|EMBL:CAQ46633.1}; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
SCNpilot_cont_500_bf_scaffold_4463_18
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22841..23428)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031716AB
Uncharacterized protein {ECO:0000313|EMBL:AHY58530.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4463_19
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23466..24305)
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EC09E5 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHY58531.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
Displaying 19 items

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