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SCNpilot_cont_500_bf_scaffold_6474_3

Organism: SCNPILOT_EXPT_300_BF_Stenotrophomonas_69_97

partial RP 32 / 55 MC: 2 BSCG 34 / 51 MC: 5 ASCG 10 / 38 MC: 1
Location: 1574..2449

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma 70 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000366D051 similarity UNIREF
DB: UNIREF100
  • Identity: 93.1
  • Coverage: 291.0
  • Bit_score: 538
  • Evalue 4.90e-150
  • rbh
rpoH; RNA polymerase sigma factor RpoH; K03089 RNA polymerase sigma-32 factor similarity KEGG
DB: KEGG
  • Identity: 92.8
  • Coverage: 291.0
  • Bit_score: 537
  • Evalue 3.50e-150
  • rbh
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.4
  • Coverage: 291.0
  • Bit_score: 537
  • Evalue 1.20e-149

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Taxonomy

Stenotrophomonas maltophilia → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 876
ATGAGCCAGAACACCTCCACTGTCCTTGTGGCGAACAATCTTCCGATTCCCAGTGCGCTGGGTTCGCTGGATGCCTACATCGGTGCCGTGCACCAGATCCCGGTGCTCTCGGTCGATGAGGAACAGGAACTGGCGCGCCGCTTCCGCGACGAGCAGGACCTGGATGCCGCGCGCGAGCTGGTGCATTCGCACCCGCGTTTCGTCGTGCACGTGGCCCGCGGCTACAACGGCTACGGCCTGCAGCTGGGCGACCTGATCCAGGAAGGCAACATCGGCCTGATGAAGGCGGTCAAGCGCTTCGACCCGGACATGGGCGTGCGCCTGGTCTCCTTCGCGGTGCACTGGATCCGTGCCGAGATGCACGAGTTCATCCTCAAGAACTGGCGCATCGTCAAGGTCGCCACGACCAAGGCGCAGCGCAAGCTGTTCTTCAACCTGCGCAAGTCCAAGACCCGACTGGGCTGGATGAACGCCGCCGAGGTCAGCGCGGTGGCCCGGGACCTGAACGTCTCCGAGCGCGAAGTGATGGAGATGGAGTCGCGCCTGTCCGGTCGCGACGTCGGTTTCGATGCGCCGTCCGACGAAGACGACGACCACGCACCGCCGTCGCCGGCGGCGTACCTGGTCGCGCGCGACGAGGACCCGTCGCAGGCCTACGAGCGCGAGGACAGCGAGGAAAACCAGCTGCAGCTGCTGCGCGAGGGCCTGGCCAACCTGGACCAGCGTTCGCGCGACATCATCGCCCGCCGCTGGCTCGATGCCGACAGCAAGGTGACGCTGCAGGAGCTTGCCGACGAGTATGGCGTGTCGGCCGAGCGCATCCGCCAGATCGAGGCCAACGCGCTGAAGAAGATGAAGGCGCTGTTCACCGCCTGA
PROTEIN sequence
Length: 292
MSQNTSTVLVANNLPIPSALGSLDAYIGAVHQIPVLSVDEEQELARRFRDEQDLDAARELVHSHPRFVVHVARGYNGYGLQLGDLIQEGNIGLMKAVKRFDPDMGVRLVSFAVHWIRAEMHEFILKNWRIVKVATTKAQRKLFFNLRKSKTRLGWMNAAEVSAVARDLNVSEREVMEMESRLSGRDVGFDAPSDEDDDHAPPSPAAYLVARDEDPSQAYEREDSEENQLQLLREGLANLDQRSRDIIARRWLDADSKVTLQELADEYGVSAERIRQIEANALKKMKALFTA*