ggKbase home page

SCNpilot_cont_500_bf_scaffold_10792_1

Organism: SCNPILOT_EXPT_300_BF_Stenotrophomonas_69_97

partial RP 32 / 55 MC: 2 BSCG 34 / 51 MC: 5 ASCG 10 / 38 MC: 1
Location: comp(3..254)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Xanthomonas hortorum pv. carotae str. M081 RepID=V7Z880_9XANT similarity UNIREF
DB: UNIREF100
  • Identity: 58.0
  • Coverage: 81.0
  • Bit_score: 103
  • Evalue 8.90e-20
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:AHY58369.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.0
  • Coverage: 80.0
  • Bit_score: 139
  • Evalue 2.70e-30
RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 54.5
  • Coverage: 77.0
  • Bit_score: 90
  • Evalue 2.50e-16

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Stenotrophomonas rhizophila → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 252
ATGAGCGCGGCACTTGCGGCGGAGCGTTCGTTGTGGCTCGCCGAGCACGTGCTGCCGTGCGAGCCGGCGCTGCGCGACTGGCTGCAGCGGCGCCTGCCGGTGCGCCAGGACGTGGATGACGTGATCCAGGAGACCTACGCCATCCTGGCGGCGATGGCGGACGTATCGCACGTGCGCCAGCCGCGCGCCTACGTGTATTCGGTGGCGCAGTCGGTGGTGCTGCAGCAGCTGCGGCGCGCGCAGGTGGTGTCG
PROTEIN sequence
Length: 84
MSAALAAERSLWLAEHVLPCEPALRDWLQRRLPVRQDVDDVIQETYAILAAMADVSHVRQPRAYVYSVAQSVVLQQLRRAQVVS