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SCNpilot_cont_500_bf_scaffold_5811

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_5811_1
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..299)
DNA (297bp) protein (99aa)
Protein TolQ n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QUB2_9RHIZ
Protein TolQ {ECO:0000313|EMBL:EKF58717.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
tolQ; protein TolQ; K03562 biopolymer transport protein TolQ
SCNpilot_cont_500_bf_scaffold_5811_2
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(692..1144)
DNA (453bp) protein (151aa)
4-hydroxybenzoyl-CoA thioesterase; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
4-hydroxybenzoyl-CoA thioesterase n=1 Tax=Rhizobium leguminosarum RepID=UPI00035D0E5D
Tol-pal system-associated acyl-CoA thioesterase {ECO:0000313|EMBL:EJB05656.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
SCNpilot_cont_500_bf_scaffold_5811_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1212..1715)
DNA (504bp) protein (168aa)
ADP-ribose pyrophosphatase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=J0H6E9_RHILT
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:EJB05638.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
NUDIX hydrolase
SCNpilot_cont_500_bf_scaffold_5811_4
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1720..2763)
DNA (1044bp) protein (348aa)
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4); K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] rbh
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
Holliday junction DNA helicase RuvB n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003605D9A rbh
SCNpilot_cont_500_bf_scaffold_5811_5
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2993..3610)
DNA (618bp) protein (206aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q0T7_9RHIZ rbh
ruvA; Holliday junction DNA helicase ruvA rbh
SCNpilot_cont_500_bf_scaffold_5811_6
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3650..4177)
DNA (528bp) protein (176aa)
ruvC; Holliday junction resolvase; K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Rhizobium sp. AP16 RepID=J2WB01_9RHIZ
SCNpilot_cont_500_bf_scaffold_5811_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4329..6596
DNA (2268bp) protein (756aa)
methyl-accepting chemotaxis protein n=1 Tax=Rhizobium phaseoli RepID=UPI00030AFF8E rbh
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:KEC74464.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein rbh
SCNpilot_cont_500_bf_scaffold_5811_8
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6797..7657
DNA (861bp) protein (287aa)
Flavin dependant oxidoreductase {ECO:0000313|EMBL:CDM59097.1}; EC=1.14.14.3 {ECO:0000313|EMBL:CDM59097.1};; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
alkane 1-monooxygenase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000371CB01
luciferase-like monooxygenase protein
SCNpilot_cont_500_bf_scaffold_5811_9
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7719..8465)
DNA (747bp) protein (249aa)
Probable transcriptional regulatory protein SHLA_56c00090 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZD0_9RHIZ rbh
Probable transcriptional regulatory protein OV14_0234 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_5811_10
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8694..9197
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HA53_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EPE95474.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5811_11
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9205..10020)
DNA (816bp) protein (272aa)
Zn-dependent hydrolase n=1 Tax=Rhizobium mongolense RepID=UPI0003B3EABE
Metallo-beta-lactamase family hydrolase protein {ECO:0000313|EMBL:AJD42683.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
conserved exported protein of unknown function rbh
SCNpilot_cont_500_bf_scaffold_5811_12
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10113..10937)
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V8G6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN87317.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5811_13
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10939..11526)
DNA (588bp) protein (196aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
5,10-methenyltetrahydrofolate synthetase; K01934 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
5,10-methenyltetrahydrofolate synthetase n=1 Tax=Rhizobium sp. CF142 RepID=J2ANE3_9RHIZ
SCNpilot_cont_500_bf_scaffold_5811_14

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comp(11617..11790)
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=uncultured organism RepID=T1W9M9_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:AGU11229.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5811_15
unknown

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comp(11959..12120)
DNA (162bp) protein (54aa)

This feature has no annotations

Displaying 15 items

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