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SCNpilot_cont_500_bf_scaffold_7414_3

Organism: SCNPILOT_EXPT_1000_BF_Niastella_43_130

partial RP 35 / 55 MC: 2 BSCG 36 / 51 MC: 4 ASCG 10 / 38 MC: 1
Location: 1705..2289

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EH42_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 49.1
  • Coverage: 175.0
  • Bit_score: 185
  • Evalue 7.10e-44
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:EDM35123.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 49.1
  • Coverage: 175.0
  • Bit_score: 185
  • Evalue 9.90e-44
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 42.3
  • Coverage: 175.0
  • Bit_score: 156
  • Evalue 6.50e-36

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Taxonomy

Pedobacter sp. BAL39 → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 585
ATGTACCATTTACTAACTGAAAGTGAATTATTAAATCTTCTTAGAAGTAGTGACGAAGCTGCTTTTACAGAGATATATGAAAGGTATTGGGAAAAGATGACCATGCATGTTTTGAAAGTTATTCAATCATCCGATGATGCGAGAGATATAGTACAGGAAGTTTTTATTTCTATATGGAAGAGACGTGGTGAAATTGTTATTTCAGGCGCTCTTGGTGCATATCTCCTTAAAAGTGTCAGAAATCTGTCTATCAGATATATTGAAAAAAATACTTCTAAGCGCAATTTTCTTTCCAGTCTTTCTCAAATGTTTAACGAAACAGCACCTGCAGGGCAGAATGATGTTGAATATGAGGAATTGGAAGGAAAGATTGCCCATGCTGTTTCCAAGCTGCCCCCTAAGATGCAGGAAGTGTTCATTCTAAGTAGAAGAGAGCATTTAAGCTACAAGGAGATTGCAAAACAAATGGGGATTACAGAAACAACCGTTAAGAAGCAGGTAAGCAACGCTATCAAAATCATACGGAATGCTGTAAATGAATTGTTTATATTATTTTTTATTGGACTAACAATACTGTTTCATTAA
PROTEIN sequence
Length: 195
MYHLLTESELLNLLRSSDEAAFTEIYERYWEKMTMHVLKVIQSSDDARDIVQEVFISIWKRRGEIVISGALGAYLLKSVRNLSIRYIEKNTSKRNFLSSLSQMFNETAPAGQNDVEYEELEGKIAHAVSKLPPKMQEVFILSRREHLSYKEIAKQMGITETTVKKQVSNAIKIIRNAVNELFILFFIGLTILFH*