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SCNpilot_cont_500_bf_scaffold_22007_3

Organism: SCNPILOT_EXPT_1000_BF_Niastella_43_130

partial RP 35 / 55 MC: 2 BSCG 36 / 51 MC: 4 ASCG 10 / 38 MC: 1
Location: comp(2605..3267)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8X7_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 44.2
  • Coverage: 190.0
  • Bit_score: 178
  • Evalue 9.80e-42
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 44.2
  • Coverage: 190.0
  • Bit_score: 178
  • Evalue 3.10e-42
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEW02334.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 44.2
  • Coverage: 190.0
  • Bit_score: 178
  • Evalue 1.40e-41

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Taxonomy

Niastella koreensis → Niastella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 663
ATGCTGTTGTTTTTAGGAAAAAATAACAATACCTTCATTGCACCGATTGGGACTAAACTATCTGTAATGACGGGAAAAGAGATATTTGGGCTGCAGGAACGGGTTGCTTTGTTCAATGACCAACATGCTTTCAGGCAATTGTTCAGGCATTATTACACGGGGCTTTTCCAGTTTGCAGTATCTATTGTGAAACTAAAAGAGCCCGCCGAAGAGATCGTAGGAGACCTGTTCGTGGCGATCTGGAATAAACGCTCCGCTATTACGAATATTTCAAACCTTAAAGTATACCTCTACATTTCAGTAAAAAACCGTTGCCTTAATTATATCAGCAGGAAAGCTGATATACGGAGTATTGACCCGGATCAGTTGGATACGACGTGCAGTGAGCTGGCGGCTGACCCCCTAGATCTGATCGTTGCTTCCGAGTTGCTTCAATCCGTCAATAAAGCCATCCGGGAACTTCCGCCCAAATGCAGGGTGGTATATAAGCTCGTGAAGGAAGATGGGCTTGCGTATAAAGAAGTTGCCGAAGTACTGAATATTTCCCAGCGAACCGTTGAGCACCATATTGCAGCAGCGGTCAGAAAGATCGCCGCATCACTTAATATTGATTTTTCTGCTTATCAAAAATCATCTGGTGAATACGTGAGAGGTGAGAGGTGA
PROTEIN sequence
Length: 221
MLLFLGKNNNTFIAPIGTKLSVMTGKEIFGLQERVALFNDQHAFRQLFRHYYTGLFQFAVSIVKLKEPAEEIVGDLFVAIWNKRSAITNISNLKVYLYISVKNRCLNYISRKADIRSIDPDQLDTTCSELAADPLDLIVASELLQSVNKAIRELPPKCRVVYKLVKEDGLAYKEVAEVLNISQRTVEHHIAAAVRKIAASLNIDFSAYQKSSGEYVRGER*