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SCNpilot_cont_750_bf_scaffold_8195_2

Organism: SCNPILOT_CONT_300_BF_Sphingomonadales_65_9_partial

partial RP 17 / 55 MC: 1 BSCG 17 / 51 MC: 1 ASCG 9 / 38 MC: 1
Location: comp(129..452)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Sphingomonas melonis RepID=UPI00037E81AB similarity UNIREF
DB: UNIREF100
  • Identity: 74.8
  • Coverage: 111.0
  • Bit_score: 165
  • Evalue 2.50e-38
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 76.6
  • Coverage: 107.0
  • Bit_score: 167
  • Evalue 1.20e-38
RNA polymerase sigma 70 subunit RpoD; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 69.0
  • Coverage: 100.0
  • Bit_score: 147
  • Evalue 2.90e-33

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Taxonomy

Sphingomonas sp. RIT328 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 324
ATGGTGAAAGTGAACGGTAGCGGTGGCGACGATGCGACGGATGTGGCCGATGCCCCGCTGATCGATTTGAACGATGCCAACGTCAAGAAGCTGATCGCCCGCGCCAAAAAGCGCGGCTACATCACCTATGACCAGCTCAACGAGGCGCTGCCGCAGGACCAGATGTCCTCCGACCAGCTCGAGGACATCATGTCCGCGCTCAACGAAATGGGCGTGAACATCGTCGAGAACGAAGAGCAGGGCGAGGACGGCGAGGAGCAGGAAGCCGACGACGAGATCGATTCGGTCGATTCCGATCAGGAAAACGCGACCGTCATCGAGTAG
PROTEIN sequence
Length: 108
MVKVNGSGGDDATDVADAPLIDLNDANVKKLIARAKKRGYITYDQLNEALPQDQMSSDQLEDIMSALNEMGVNIVENEEQGEDGEEQEADDEIDSVDSDQENATVIE*