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SCNpilot_cont_750_bf_scaffold_8944_4

Organism: SCNPILOT_CONT_300_BF_Sphingomonadales_65_9_partial

partial RP 17 / 55 MC: 1 BSCG 17 / 51 MC: 1 ASCG 9 / 38 MC: 1
Location: 1737..2339

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKK2_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 54.7
  • Coverage: 192.0
  • Bit_score: 175
  • Evalue 4.40e-41
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAO39197.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 61.3
  • Coverage: 186.0
  • Bit_score: 187
  • Evalue 1.60e-44
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 55.5
  • Coverage: 164.0
  • Bit_score: 162
  • Evalue 1.60e-37

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Taxonomy

Sphingomonas changbaiensis → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 603
ATGCGCGGTGGTCGCCTGTTTCGTCCGCGCCTCGTCTCGCCGTCGCGCGACGCAGCGGGGCGGGAGGCGGCGCAGGCCGAACGCTTCCGCCTCGTCATGCTGCCGCACCTCGATGCCGCTTACAGCTTCGCGCGCTATCTGACCCGCGACAGCGTGGCGGCCGAGGATGCCGTGCAGGATGCCTTTCTACGCGCCTTCCGCGGCTTCGACGGTTGGCGCGGCGATAATCCGCGCGCGTGGCTGTTCGCGATCGTGCGCCATCGCTGCCTCGACGCGATGACGGCGCGCCGCGATCCGCTGCGCGGCGCCGAGCCGGTTGAGGCGATCGATCGCGATTCCGCGGTTGCCGCAGCAGAGCCCGGAGCGCTGGAGGATCAAGCGGCGCGACGTAGCGAGATCGCGATGCTGCGCGGCGCGATCGAAAGTCTGCCGGAGCCGTTTCGCGAAGCGCTGGTGCTGCGCGAGCTGGAAGAGCTGAGCTACAAGGATATCGCCACCGTCACCGGGGCGCCGATCGGCACTGTCATGTCGCGGCTGGCGCGGGCGCGGCAGATGCTCGCGACCTTGTTGTTGCCGCCCGTATCGCGAAAGGCGCAAGCATGA
PROTEIN sequence
Length: 201
MRGGRLFRPRLVSPSRDAAGREAAQAERFRLVMLPHLDAAYSFARYLTRDSVAAEDAVQDAFLRAFRGFDGWRGDNPRAWLFAIVRHRCLDAMTARRDPLRGAEPVEAIDRDSAVAAAEPGALEDQAARRSEIAMLRGAIESLPEPFREALVLRELEELSYKDIATVTGAPIGTVMSRLARARQMLATLLLPPVSRKAQA*