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SCNpilot_expt_500_p_scaffold_121_3

Organism: SCNPILOT_EXPT_300_BF_Sphingobacteriia_47_13

near complete RP 53 / 55 BSCG 50 / 51 ASCG 11 / 38
Location: comp(1421..1975)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMT1_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 80.4
  • Coverage: 184.0
  • Bit_score: 309
  • Evalue 3.10e-81
  • rbh
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 80.4
  • Coverage: 184.0
  • Bit_score: 309
  • Evalue 9.70e-82
  • rbh
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEW03102.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.4
  • Coverage: 184.0
  • Bit_score: 309
  • Evalue 4.30e-81

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Taxonomy

Niastella koreensis → Niastella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 555
ATGGAGCTAACCCCGCAGACCGATAGCGTTCTATTAACCCAATTCCGGGAACCGGCTACAAAGGAGCGGGCTTTTGCTGCTATTGTCAAAAAATACCAGGAAAAACTTTACTGGCATATCCGCCGCATGGTAGTGGGGCACGACGATGCAGACGATGTGCTGCAGAATGTTTTTATCCGCATGTGGAAAGGCCTCGAAAATTTCCGGGAAGACAGCCAGTTATATACCTGGCTCTACCGTATCGCTACCAACGAAAGTCTTACCTATCTCGAACAACAGAAAAAGCGCTCATCGGTGAGCATCGACAGCCTCGAGAACGGGCTGGAAAACCGTATCCGTGCCGACGAACACTTCGATGCCAATAAATTGGAATGGAAACTGCAACTCGCTATGCAGCAGCTACCTGAGAAGCAGCGGATCGTATTCAACCTGCGGTATTACGATGAAATGCCCTACGAACAAATGAGTAAAATACTGGAAACCAGTGAAGGAGCATTGAAGGCAAGCTACCATCACGCAGTGAAAAAAATAGAGGCCTACATTAAAAATCATTAA
PROTEIN sequence
Length: 185
MELTPQTDSVLLTQFREPATKERAFAAIVKKYQEKLYWHIRRMVVGHDDADDVLQNVFIRMWKGLENFREDSQLYTWLYRIATNESLTYLEQQKKRSSVSIDSLENGLENRIRADEHFDANKLEWKLQLAMQQLPEKQRIVFNLRYYDEMPYEQMSKILETSEGALKASYHHAVKKIEAYIKNH*