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SCNpilot_expt_500_p_scaffold_117_18

Organism: SCNPILOT_EXPT_750_P_Variovorax_66_42

near complete RP 51 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(17944..18288)

Top 3 Functional Annotations

Value Algorithm Source
FmdB family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00035D7495 similarity UNIREF
DB: UNIREF100
  • Identity: 94.7
  • Coverage: 114.0
  • Bit_score: 232
  • Evalue 1.70e-58
Putative regulatory protein, FmdB family {ECO:0000313|EMBL:EJL73158.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.1
  • Coverage: 114.0
  • Bit_score: 224
  • Evalue 6.70e-56
FmdB family regulatory protein similarity KEGG
DB: KEGG
  • Identity: 89.6
  • Coverage: 115.0
  • Bit_score: 223
  • Evalue 2.60e-56

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Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 345
ATGCCGACCTACGACTACGCCTGCGGGCACTGCGGCGGCTTCGAGGCGCTGCGGCCTTCGGGCCTGCGCGACGAGCCGGCCGTGTGCCCCGACTGTGGCAGCGCCTCGCCGCGCGTGCTGTCGGCCGCGCCCCGGCTCGCGCTGATGGCCTCGGGCACGCGCCGCGCCATGGAAACCAACGAGCGCGCGCGGCACGAGCCGGGCAGCTCGCGGGACTACGCGCGCTTCAAGCACCCGGCGGGCTGCGGCTGCTGCGGCTCCGGCAGCAAGCGCGGCGCGACGGTGACTGCGCCCAACGGCGCCAAGTCCGCGCCTTCACGCCGGCCCTGGATGATCAGCCACTGA
PROTEIN sequence
Length: 115
MPTYDYACGHCGGFEALRPSGLRDEPAVCPDCGSASPRVLSAAPRLALMASGTRRAMETNERARHEPGSSRDYARFKHPAGCGCCGSGSKRGATVTAPNGAKSAPSRRPWMISH*