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SCNpilot_expt_500_p_scaffold_117

Search features with annotation key words

Displaying items 1-30 of 119 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_117_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..148
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CG93_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL71039.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_117_2
unknown

Not on your lists

145..315
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_117_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

392..2677
DNA (2286bp) protein (762aa)
glycoside hydrolase family protein; K05349 beta-glucosidase [EC:3.2.1.21] rbh
beta-glucosidase n=1 Tax=Variovorax paradoxus RepID=UPI0003682053 rbh
Beta-glucosidase-like glycosyl hydrolase {ECO:0000313|EMBL:EJL73151.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_p_scaffold_117_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2699..3052)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000375CE5A
Variovorax paradoxus strain MEDvA23 contig_87, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ21491.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_117_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3228..3521
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XDT0_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU50310.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_117_6
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3518..3868
DNA (351bp) protein (117aa)
glyoxalase n=1 Tax=Variovorax paradoxus RepID=UPI000378FC1F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE36702.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
SCNpilot_expt_500_p_scaffold_117_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3890..5188)
DNA (1299bp) protein (433aa)
aspartate carbamoyltransferase (EC:2.1.3.2); K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] rbh
aspartate carbamoyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI00037F6E0F rbh
Aspartate carbamoyltransferase {ECO:0000313|EMBL:EJL73152.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_p_scaffold_117_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5243..6247)
DNA (1005bp) protein (335aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2KJ91_9BURK rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL73153.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_500_p_scaffold_117_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6401..7579
DNA (1179bp) protein (393aa)
aminotransferase class I and II; K00812 aspartate aminotransferase [EC:2.6.1.1] rbh
Aspartate/tyrosine/aromatic aminotransferase n=1 Tax=Variovorax sp. CF313 RepID=J3CK19_9BURK rbh
Aspartate/tyrosine/aromatic aminotransferase {ECO:0000313|EMBL:EJL73154.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_p_scaffold_117_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7576..8562
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2JZ55_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL73155.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_117_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8559..9287
DNA (729bp) protein (243aa)
Demethylmenaquinone methyltransferase n=1 Tax=Variovorax sp. CF313 RepID=J3CK65_9BURK rbh
Demethylmenaquinone methyltransferase {ECO:0000313|EMBL:EJL73156.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Dimethylmenaquinone methyltransferase rbh
SCNpilot_expt_500_p_scaffold_117_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9364..9714)
DNA (351bp) protein (117aa)
alpha/beta hydrolase n=1 Tax=Variovorax paradoxus RepID=UPI00037B18D8
alpha/beta fold family hydrolase
Alpha/beta fold family hydrolase {ECO:0000313|EMBL:ADU37743.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_117_13
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9890..11491)
DNA (1602bp) protein (534aa)
Outer membrane protein, tolC-like n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SUM8_JANMA rbh
tolC3; outer membrane protein, tolC-like rbh
Outer membrane protein, tolC-like {ECO:0000313|EMBL:ABR89824.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
SCNpilot_expt_500_p_scaffold_117_14
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11488..14616)
DNA (3129bp) protein (1043aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SUM9_JANMA rbh
Heavy metal efflux pump, CzcA family {ECO:0000313|EMBL:ABR89727.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
czcA1; CzcA family heavy metal efflux protein; K15726 cobalt-zinc-cadmium resistance protein CzcA rbh
SCNpilot_expt_500_p_scaffold_117_15
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14613..15785)
DNA (1173bp) protein (391aa)
hypothetical protein n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI000363A296 rbh
czcB1; cation efflux system protein rbh
Cation efflux system protein {ECO:0000313|EMBL:ABR90377.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
SCNpilot_expt_500_p_scaffold_117_16
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15893..16561
DNA (669bp) protein (223aa)
Two-component response regulatory protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HPY3_RUBGI rbh
two-component response regulatory protein rbh
Two-component response regulatory protein {ECO:0000313|EMBL:BAL95070.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
SCNpilot_expt_500_p_scaffold_117_17
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16558..17937
DNA (1380bp) protein (460aa)
sensor protein (EC:2.7.13.3); K07649 two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
Sensor protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HPY4_RUBGI rbh
SCNpilot_expt_500_p_scaffold_117_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17944..18288)
DNA (345bp) protein (115aa)
FmdB family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00035D7495
Putative regulatory protein, FmdB family {ECO:0000313|EMBL:EJL73158.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
FmdB family regulatory protein
SCNpilot_expt_500_p_scaffold_117_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18305..19537)
DNA (1233bp) protein (411aa)
formamidase (EC:3.5.1.49); K01455 formamidase [EC:3.5.1.49] rbh
Putative acetamidase/formamidase n=1 Tax=Variovorax sp. CF313 RepID=J3CK21_9BURK rbh
Putative acetamidase/formamidase {ECO:0000313|EMBL:EJL73159.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_p_scaffold_117_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19562..20263)
DNA (702bp) protein (234aa)
urea ABC transporter ATP-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00037D9F3E rbh
Urea ABC transporter, ATP-binding protein UrtE {ECO:0000313|EMBL:EJL73160.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
urea ABC transporter ATP-binding protein UrtE; K01996 branched-chain amino acid transport system ATP-binding protein rbh
SCNpilot_expt_500_p_scaffold_117_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20265..21008)
DNA (744bp) protein (248aa)
urea ABC transporter ATP-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI000380C99F rbh
urea ABC transporter ATP-binding protein urtd; K01995 branched-chain amino acid transport system ATP-binding protein rbh
Urea ABC transporter, ATP-binding protein UrtD {ECO:0000313|EMBL:ADU37747.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_117_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21030..22220)
DNA (1191bp) protein (397aa)
urea ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI00036F49C1 rbh
urea ABC transporter permease; K01998 branched-chain amino acid transport system permease protein rbh
Urea ABC transporter, permease protein UrtC {ECO:0000313|EMBL:ACS19762.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_p_scaffold_117_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22249..23163)
DNA (915bp) protein (305aa)
urea ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI0003685675 rbh
urtB1; urea ABC transporter, permease protein UrtB rbh
Urea ABC transporter, permease protein UrtB {ECO:0000313|EMBL:AGU50318.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_117_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23319..24575)
DNA (1257bp) protein (419aa)
Urea ABC transporter, urea-binding protein UrtA n=1 Tax=Variovorax paradoxus B4 RepID=T1XDB7_VARPD rbh
Variovorax paradoxus strain MEDvA23 contig_28, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31927.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
urtA1; urea ABC transporter, urea-binding protein UrtA rbh
SCNpilot_expt_500_p_scaffold_117_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24805..28197
DNA (3393bp) protein (1131aa)
Signal transduction histidine kinase n=1 Tax=Variovorax sp. CF313 RepID=J2JZ66_9BURK rbh
Signal transduction histidine kinase {ECO:0000313|EMBL:EJL73165.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
integral membrane sensor hybrid histidine kinase rbh
SCNpilot_expt_500_p_scaffold_117_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28175..29077
DNA (903bp) protein (301aa)
LuxR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003794753 rbh
Response regulator containing a CheY-like receiver domain and a GGDEF domain {ECO:0000313|EMBL:EJL73166.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
two component LuxR family transcriptional regulator rbh
SCNpilot_expt_500_p_scaffold_117_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29196..29966
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2T559_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL73167.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_117_28
unknown

Not on your lists

comp(29974..30453)
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000360CD32
SCNpilot_expt_500_p_scaffold_117_29
unknown

Not on your lists

comp(30566..31084)
DNA (519bp) protein (173aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_117_30
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31258..32154
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036CD1DC rbh
SPFH domain / Band 7 family protein {ECO:0000313|EMBL:KFC73460.1}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
hypothetical protein rbh
Displaying items 1-30 of 119 in total

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