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SCNpilot_expt_500_p_scaffold_117_26

Organism: SCNPILOT_EXPT_750_P_Variovorax_66_42

near complete RP 51 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 28175..29077

Top 3 Functional Annotations

Value Algorithm Source
LuxR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003794753 similarity UNIREF
DB: UNIREF100
  • Identity: 95.3
  • Coverage: 298.0
  • Bit_score: 551
  • Evalue 4.40e-154
  • rbh
Response regulator containing a CheY-like receiver domain and a GGDEF domain {ECO:0000313|EMBL:EJL73166.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.3
  • Coverage: 298.0
  • Bit_score: 547
  • Evalue 1.50e-152
two component LuxR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 92.8
  • Coverage: 304.0
  • Bit_score: 532
  • Evalue 1.10e-148
  • rbh

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Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 903
ATGCAGACACCCTCGCCCCTTGAATCGCCCTTGGCCGAACGCCCCGTGGTGCTGGTGGTCGACGACGCGCCCAGCAGCCTGGGCATGCTGTGCGACACGCTGGAGGCCAGCGGCTACACCGTGCTGGTGGCCGCCGACGGCGAAGCCGCGCTGCAGCGGCTGGAGCTGGTGGTGCCCGACGCGATATTGCTCGACGGCCTGATGCCCGGACTCTCGGGCTTCGAGACCTGCCGCCGCATCAAGGCCAACCCGGCGCTCGCGCACATCCCGGTGCTGTTCATGACCGGGCTGTCGGAGACCTCGCACGTGGTCGAGGGCTTCGAGTGCGGCGGCGTCGACTATGTGGTGAAGCCGATCCGCGCGCAGGAGGTGCTGGCGCGGCTGCACACCCACGCGCGCAACGCCCGCATCACGCGCATGGCGCGCGACGCGGTCGACGTGGCCGGCATGGGCGTGGTGTTCGTCGACACGCGCGGGCGCATCGCATGGCGATCTCCGCAGGCCGCGCTGTGGCTGCATGCGCTGGAAGTGCCTGCGGCGCCGGGGCTGCTGCCCGCATCGCTGGAAGCCGCGCTGGCGCCGGGTGCGGCCGTTGCCATCGGCACCGCCACAGGCATGCGGCTGTCGGTGCGCAACCTGGGCGCCGCGGCGCTCGGCGAAACCATGCTGCTGTTCGCGATGCAGCGCGAGGGCCCCGCCACGCGGCTCGCAGAAGCCGCGCTCACGCCGCGCGAGACCGAAGTGCTGTCATGGCTCGCCAAGGGCAAGACCAACCGCGACATCGGCGAGATCCTGGGCACCAGCCCGCGCACGGTGAACAAGCACCTGGAGCACATCTTCGAGAAGCTGGGGGTGGAGACGCGGGCGGCGGCCGCGGCACTCGCGAGCGGGCAACTGGCGTGA
PROTEIN sequence
Length: 301
MQTPSPLESPLAERPVVLVVDDAPSSLGMLCDTLEASGYTVLVAADGEAALQRLELVVPDAILLDGLMPGLSGFETCRRIKANPALAHIPVLFMTGLSETSHVVEGFECGGVDYVVKPIRAQEVLARLHTHARNARITRMARDAVDVAGMGVVFVDTRGRIAWRSPQAALWLHALEVPAAPGLLPASLEAALAPGAAVAIGTATGMRLSVRNLGAAALGETMLLFAMQREGPATRLAEAALTPRETEVLSWLAKGKTNRDIGEILGTSPRTVNKHLEHIFEKLGVETRAAAAALASGQLA*