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SCNpilot_expt_500_p_scaffold_204_3

Organism: SCNPILOT_EXPT_750_P_Variovorax_66_42

near complete RP 51 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(1801..3597)

Top 3 Functional Annotations

Value Algorithm Source
Putative type II/IV secretion system protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X8D7_VARPD similarity UNIREF
DB: UNIREF100
  • Identity: 97.3
  • Coverage: 598.0
  • Bit_score: 1145
  • Evalue 0.0
  • rbh
Putative type II/IV secretion system protein {ECO:0000313|EMBL:AGU48430.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.3
  • Coverage: 598.0
  • Bit_score: 1145
  • Evalue 0.0
putative type II/IV secretion system protein similarity KEGG
DB: KEGG
  • Identity: 97.3
  • Coverage: 598.0
  • Bit_score: 1145
  • Evalue 0.0
  • rbh

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1797
ATGAGCGCTGTACCCGCTGCTTCCGCCCCCGCCTCGCTGGCCGCGCGCCACGAAGGCCCGCTCGATCTGCGGCGCCTGATCGAATGGCTCGCCAGCGACGGCATGATCTCTCCGGTCGAAGCCAAGCGCACCATTGCGCGCTGCGCCCAGGCCGAGAGCCGGCAGGCACCGCTGGTGCGCCTGGCCAACGTGGCGATGACCCGCGAGAGCGACGGCAAGCCGCTCGACCTGGAAATGCTCACGCAGTGGCTCGCGGGCCGCGCGGGGCTCACTTACCTGCGCATCGATCCGCTCAAGGTCGACGTGGGCAAGGTGGCCGACACCATGAGCGCGGCTTACGCCGAGCGCCACAAGGTGCTGCCGGTGCAGGTGCTGCCCAACGAAGTGGTGGTGGCCACGGCCGAGCCCTTTCTCACCGACTGGATCGCCGAGGTCGAACGGCAGGCGCGCCGTTCGGTGCGGCGCGTGGTCGCCAACCCGGCCGACATCCAGCGCTACACGGCCGAGTTCTTCGCGCTCGCGAAGTCGGTGCGCGCCGCGCAGAAGGCCGGCGGCAATACCGGCGGCGCGAGCTTCGAACAACTGGTCGAGCTGGGCAAGAGCAACAAGCAGCTCGACGCCAACGACCAGAGCGTGGTGCAGGTGGTCGACTGGCTGTGGCAATACGCCTTCGACCAGCGCGCGAGCGACATCCACCTGGAGCCGCGCCGCGAGCAGGGCGTGATCCGCTTTCGCATCGACGGCATCCTGCATCCGGCCTACCAGATGCCGATGGGCGTGATGAACGCGATGGTCGCGCGCATCAAGCTGCTCGGCCGCATGGACGTGGTCGAGAAGCGCCGTCCGCTCGACGGCCGCATCAAGACCCGCAACATGCGCGGCGACGAAGTCGAAATGCGCCTGTCGACCCTGCCGACTGCCTTCGGCGAAAAGATGGTCATGCGGATCTTCGACCCCGACACCGCGGTGAAGGACCTCGACGCGCTGGGCTTCGCGCAGCATGACGCGCAGCGCTGGGAACAGCTCGTCACGCGGCCCAACGGCATCATCCTGGTGACCGGGCCCACGGGCTCGGGCAAGACCACCACGCTGTACTCCACGCTCAAGCGCGTGGCGACCGAAGAGGTCAACGTGAGCACGGTCGAAGACCCGATCGAAATGATCGAGCCGTCGTTCAACCAGACGCAGGTGCAGCCGCAGCTCGACTTCGGCTTCACCGAAGGGCTGCGCGCATTGATGCGGCAGGACCCGGACATCATCATGGTCGGCGAAATCCGCGACCTTGCCACCGCCGAGATGGCGGTGCAGGCCGCGCTCACCGGCCACCTGGTGTTCAGCACGCTGCACACCAACGACGCGCCGAGCGCCATCACGCGGCTGATGGAGCTGGGCGTGCCGTCGTACCTCATCAACGCGGTGATGCTGGGCGTGCTGGCGCAGCGGCTGGTGCGCACGCTGTGCCCGCACTGCAAGCAGCCCGACGACACCGTCACGCGCGAGAGCCTGGAAACCATCGTCAAGCCGTGGCAGATCACGGGCTCGGTGCGCGCTTACAAGCCGGTGGGCTGTGTCGACTGCCGCATGACCGGCTACATGGGCCGCATGGGGCTCTATGAACTGCTGAGCATCAGCGAGTCGTTCAAGACGCAGGTGACGAAGGAGCCCAACCTGGCGGGCCTGCGACGCCAGGCGGTGATCGACGGCATGCGTCCGCTGCGGCTGGCCGGCGCGCTGCGCGTGGCCGAAGGCGTGACCACCATCGAGGAAGTGCTGAGCGCCACGCCGCCGCTCGAATAA
PROTEIN sequence
Length: 599
MSAVPAASAPASLAARHEGPLDLRRLIEWLASDGMISPVEAKRTIARCAQAESRQAPLVRLANVAMTRESDGKPLDLEMLTQWLAGRAGLTYLRIDPLKVDVGKVADTMSAAYAERHKVLPVQVLPNEVVVATAEPFLTDWIAEVERQARRSVRRVVANPADIQRYTAEFFALAKSVRAAQKAGGNTGGASFEQLVELGKSNKQLDANDQSVVQVVDWLWQYAFDQRASDIHLEPRREQGVIRFRIDGILHPAYQMPMGVMNAMVARIKLLGRMDVVEKRRPLDGRIKTRNMRGDEVEMRLSTLPTAFGEKMVMRIFDPDTAVKDLDALGFAQHDAQRWEQLVTRPNGIILVTGPTGSGKTTTLYSTLKRVATEEVNVSTVEDPIEMIEPSFNQTQVQPQLDFGFTEGLRALMRQDPDIIMVGEIRDLATAEMAVQAALTGHLVFSTLHTNDAPSAITRLMELGVPSYLINAVMLGVLAQRLVRTLCPHCKQPDDTVTRESLETIVKPWQITGSVRAYKPVGCVDCRMTGYMGRMGLYELLSISESFKTQVTKEPNLAGLRRQAVIDGMRPLRLAGALRVAEGVTTIEEVLSATPPLE*