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SCNpilot_expt_500_p_scaffold_110_23

Organism: SCNPILOT_CONT_300_BF_Bacteroidetes_43_15

near complete RP 52 / 55 MC: 2 BSCG 50 / 51 MC: 2 ASCG 13 / 38
Location: comp(25150..25692)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XW61_PEDHD similarity UNIREF
DB: UNIREF100
  • Identity: 38.1
  • Coverage: 176.0
  • Bit_score: 113
  • Evalue 3.20e-22
RNA polymerase sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 38.1
  • Coverage: 176.0
  • Bit_score: 113
  • Evalue 1.00e-22
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:ACU04140.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 38.1
  • Coverage: 176.0
  • Bit_score: 113
  • Evalue 4.50e-22

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Taxonomy

Pedobacter heparinus → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 543
TTGTCTTTCGAGCAACTATACCGCCAGCTATTCCCGGATCTGCATCGCTATGCATTTACCATTCTGAACGATTCGGAATGGGCTGCTGATACGGTACAGGATGCTTTCGTGAAATATTATCAGCAGGTAGAAAAGGGTAAGCAGATCGCATATGATAGAGCTTACCTGTACAAAATTGTGCATCATACTGCGGTGAGTGAATTAAGGAAAAAAGCCCTAGCTGATAAGTATGTATCATTGGCCGGAGCAGATGTTGCAATAAGTGCTGAGGACCGGAGGATAGAAAAAGAAAGGGATGTTGTGCTGCAGGTGCTCATCACCAGAGCCTTGGACAAGTTACCGGAACAATGCAGAATTGTTTTTTTGAAAAGCAGGACCGGGGGCAGGAAATACCGCGAAATAGCAGCCGAAATGGGCCTTTCTGTTAAAACCGTAGAGGCACATATGTCTAAAGCTTTAAAAATAATCCAGGAATTTATAAGGGTAAACAGGGATAAACTGAGTCTTATACAAATAGTAATGTTATATGAACTATTCTGTTAA
PROTEIN sequence
Length: 181
LSFEQLYRQLFPDLHRYAFTILNDSEWAADTVQDAFVKYYQQVEKGKQIAYDRAYLYKIVHHTAVSELRKKALADKYVSLAGADVAISAEDRRIEKERDVVLQVLITRALDKLPEQCRIVFLKSRTGGRKYREIAAEMGLSVKTVEAHMSKALKIIQEFIRVNRDKLSLIQIVMLYELFC*