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SCNpilot_expt_500_p_scaffold_7107_4

Organism: SCNPILOT_EXPT_500_P_Alphaproteobacteria_36_9_partial

near complete RP 51 / 55 BSCG 51 / 51 ASCG 12 / 38
Location: 2283..2906

Top 3 Functional Annotations

Value Algorithm Source
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.8
  • Coverage: 206.0
  • Bit_score: 372
  • Evalue 3.60e-100
50S ribosomal protein L4 id=3298607 bin=GWC2_Alphaproteobacteria_42_16 species=Rhodospirillum centenum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good + similarity UNIREF
DB: UNIREF100
  • Identity: 64.7
  • Coverage: 207.0
  • Bit_score: 276
  • Evalue 1.90e-71
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 similarity KEGG
DB: KEGG
  • Identity: 63.6
  • Coverage: 206.0
  • Bit_score: 269
  • Evalue 1.30e-69

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Taxonomy

Candidatus Caedibacter acanthamoebae → Caedibacter → Rickettsiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 624
ATGATAAAGTGCGATATTATTAGTTTAGAAAATAAAAAAGTAGGCCAGATAGAGCTATCTTCTGAAGTTTTTGGTCTTCCAGTACGTCGTGATATTCTGACGCGAGTTGTGAATTGGCAATTGGCAAAGCGCCGTGCCGGGACTCATAAAACACGTGGAATCAGCGATATCAGCGGAACAACGCGTAAGCCTTGGAAACAAAAGGGTACGGGGCGTGCTCGTCAAGGAAGTCTTCGCTCTCCACAATTCCGTGGTGGTGCGGTTATATTTGGGCCCGTTGTTCGTGATCATGGCTATAGCTTGCAGAAAAAAGTACGTCGTCTTGGATTGATGACAGCACTTTCATCTAAGCTTGCAGAAGGAAAGCTTTTTATTATTGATTCTCTTGAACAAAATAGTTCAAAAACACAAGATGCAGTTAAAAATCTGGAAAAACTTGGTGTAACTAAAGCTCTTTTTGTTGATGGCATTGAGGTAAATAAAAATTTTGCTTTAGCTACCCGTAATATTCCTTATATTGATGTTCTTCCGCAACAAGGTTTGAATGTTTATGACATTCTTCGTTGCGAAACATTAATTTTAACAAAAGCGGCTGTAGAAAGTATAGAACAGAGGCTAAAATGA
PROTEIN sequence
Length: 208
MIKCDIISLENKKVGQIELSSEVFGLPVRRDILTRVVNWQLAKRRAGTHKTRGISDISGTTRKPWKQKGTGRARQGSLRSPQFRGGAVIFGPVVRDHGYSLQKKVRRLGLMTALSSKLAEGKLFIIDSLEQNSSKTQDAVKNLEKLGVTKALFVDGIEVNKNFALATRNIPYIDVLPQQGLNVYDILRCETLILTKAAVESIEQRLK*