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SCNpilot_expt_1000_bf_scaffold_1889_2

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: 322..1425

Top 3 Functional Annotations

Value Algorithm Source
Diguanylate cyclase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRE2_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 77.0
  • Coverage: 348.0
  • Bit_score: 563
  • Evalue 1.40e-157
Diguanylate cyclase {ECO:0000313|EMBL:EYR79084.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 77.0
  • Coverage: 348.0
  • Bit_score: 563
  • Evalue 1.90e-157
sensory box/GGDEF family protein similarity KEGG
DB: KEGG
  • Identity: 52.8
  • Coverage: 214.0
  • Bit_score: 241
  • Evalue 4.90e-61

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1104
ATGGCCAAACCGCACGGTTCGACCTCCATTGCCATGCGAGAAACGGAACACGAGCCGTTCTGGCGCCGGCTCTTCGCGCGGTCCGGATTCGGTTACGCCGCGCTCGACGGCAAGGGGCGCATCGTCGATGCGAACACGGCCTTCCTTAGGCCGTTCGCGGTGACCGCGGCGAGCGAACTGCCGGACTTTACGGCCTGCGTCTCTCCCCGCGACCGTGCCGTCCTCACCCTTGCCATGCGCCCGTCCGTGGCGGAACAGGCCCCCTGGGAAATCCGCCTGCAACGGCCGGACGGCGAGGAATTCTGGGTGCTTGCCTCCTTCATCGAGCCGCCGTCGCTCTCCGAGGCAAGCCCCGGCCCCGCCCTCATCGTGCAGACGCTCGACATCGACGAGCGCAAGCGCAATGCGCTGGAACTGGCGGAGCGGGAAAGCCGCTGGAATCATGCCCTCGAATCCGCCGGCCAGGGGGTCTGGGATCACGACTTCGCCCGCGGCGATCTCTTCTATTCCCGCCAATGGCGCGCGATCCGCGGCCTGCAGCCGGACGACCCGGTCGAAGCCTCCCTCGACGCCTGGATCCGGTCGGTGCACCCCGACGACCAGGCGCACGTTCTCGCGCAGATCGCCCGGCAGGAGACCGGCGAGGCCGCCTTCTCCATCTTCAGCTATCGCGAGCGGCACAGGGATGGGCACTGGGTCTGGATCGAGAGCCGCGGCGCGGTCGTCGAATACGGCCCGGACGGCAGGCCGAGCCGCATCGCCGGCACGGATACCGACATAACCGAGCGCAAGGAGGCGGAAGAGCGCCTCGCCCAGATGTCCCGACGGCTGGAGCTGGCGCTCGACGTCTCGCGCATCGGCGTCTTCGAGGTCAACCTGCGCACGAACGAGGTGCGCTGGGACGACCGCATGATCGAGATGTACGGCCTGACGGAAGCGCCCGACAACGCCACATGGGAACGTACGCTGCATCCCGAGGATGCGCCGAGGGCCCTTGCCAGGGTCAGCGATGGCATCCTCCATGGTCGCGATTTCGCGAACGAGNNNNNNNNNNNNNNNNNNNCCGCCATATCCGCGGGCGCGCCGCACCCTATGTCGACATGA
PROTEIN sequence
Length: 368
MAKPHGSTSIAMRETEHEPFWRRLFARSGFGYAALDGKGRIVDANTAFLRPFAVTAASELPDFTACVSPRDRAVLTLAMRPSVAEQAPWEIRLQRPDGEEFWVLASFIEPPSLSEASPGPALIVQTLDIDERKRNALELAERESRWNHALESAGQGVWDHDFARGDLFYSRQWRAIRGLQPDDPVEASLDAWIRSVHPDDQAHVLAQIARQETGEAAFSIFSYRERHRDGHWVWIESRGAVVEYGPDGRPSRIAGTDTDITERKEAEERLAQMSRRLELALDVSRIGVFEVNLRTNEVRWDDRMIEMYGLTEAPDNATWERTLHPEDAPRALARVSDGILHGRDFANEXXXXXXXAISAGAPHPMST*