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SCNpilot_expt_1000_bf_scaffold_1889_19

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: comp(13562..14383)

Top 3 Functional Annotations

Value Algorithm Source
tRNA 2-thiocytidine biosynthesis protein TtcA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT31_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 91.3
  • Coverage: 242.0
  • Bit_score: 453
  • Evalue 1.10e-124
tRNA 2-thiocytidine biosynthesis protein TtcA {ECO:0000256|HAMAP-Rule:MF_01850}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.3
  • Coverage: 242.0
  • Bit_score: 453
  • Evalue 1.60e-124
C32 tRNA thiolase; K14058 tRNA 2-thiocytidine biosynthesis protein TtcA similarity KEGG
DB: KEGG
  • Identity: 89.8
  • Coverage: 226.0
  • Bit_score: 421
  • Evalue 2.00e-115

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 822
ATGACCCTTGCCCTTGCCGAAATCGAAGACGATGCACCGGAGGATGGCCGCCATCCGCTCTTTGCCGATGCGCCGTCGAGCGTCTCCTTCAACAAGCTGCGCAAGCGCCTGCTCCGCCAGGTGCGGCAGGCGATGGACGATTTCGCCATGCTCAAGGGCCAGAAGCGCTGGCTCGTCGGCCTTTCGGGCGGCAAGGACAGCTACGGCCTGCTGGCGCTCCTCATGGACCTCCAATGGCGCGGCCTTCTGCCCGTCGAGTTGATTGCCTGCAATCTCGACCAGGGCCAGCCGAATTTTCCAAAGCACATCCTGCCGGACTACCTGAAATCCATCGGCGTGAAACACCGCATCGAATATCGCGACACCTATTCCATCGTGAAGGAGAAGGTGCCGACGGGATCGACCTATTGCTCGCTCTGCTCGCGCCTCCGGCGCGGCAACCTCTATCGCATCGCCCGGGAGGAGGGCTGCGACGCGCTGGTGCTCGGCCACCATCGCGAGGATATCCTCGAAACCTTCTTCATGAACTTCTTCCATGGCGGGCGGCTCGCAGCCATGCCGCCGAAGCTCCTCAACGACGAGGGCGACCTGATGGTGCTGCGCCCGCTCGCCTATGCGGCGGAGGACGACCTTGCCAAATTCGCCGCCGCCATGCGTTTCCCGATCATTCCCTGCGACCTCTGCGGCTCGAGGCGATGCTGGCGGATATCGAGACGCGCATGCCGGGCCGCAAGGACGCCATGCTGCGGGCCCTCGGCCACACCAACCCGTCCCATCTCCTCGATCCGAAGCTTTTCGATTTCTCCTCCCTGGAAACGGTAA
PROTEIN sequence
Length: 274
MTLALAEIEDDAPEDGRHPLFADAPSSVSFNKLRKRLLRQVRQAMDDFAMLKGQKRWLVGLSGGKDSYGLLALLMDLQWRGLLPVELIACNLDQGQPNFPKHILPDYLKSIGVKHRIEYRDTYSIVKEKVPTGSTYCSLCSRLRRGNLYRIAREEGCDALVLGHHREDILETFFMNFFHGGRLAAMPPKLLNDEGDLMVLRPLAYAAEDDLAKFAAAMRFPIIPCDLCGSRRCWRISRRACRAARTPCCGPSATPTRPISSIRSFSISPPWKR*