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SCNpilot_expt_1000_bf_scaffold_2863_10

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: comp(6759..7112)

Top 3 Functional Annotations

Value Algorithm Source
DNA-binding transcriptional activator of the SARP family n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0K455_RHILT similarity UNIREF
DB: UNIREF100
  • Identity: 59.0
  • Coverage: 117.0
  • Bit_score: 153
  • Evalue 1.10e-34
DNA-binding transcriptional regulator SARP family {ECO:0000313|EMBL:EYR78734.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 74.4
  • Coverage: 117.0
  • Bit_score: 188
  • Evalue 5.40e-45
SARP family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 57.3
  • Coverage: 117.0
  • Bit_score: 151
  • Evalue 2.20e-34

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 354
GTGCAGGCCTCGCGGCCCGACATCGGCCTCCAGAAGATCGAACACGCCATCGAGCTGAACCCGCTGCCGCCGGACGAGTATTTCTGGACCGCCGCCGGCGCCAGCTATTCGCTCGGCCTCTACCGGCAGGCGCTCGACTATATCGCCCGCATGAAGGACCGCACCGCCGCCGACCGCCTTTCGGCAGCGAGCTGGAGCATGCTGGGCGATGTCAAGAAAGCGCGGCACTTCATTCGCCGCACTTACGCCGTCCATCCGGACTTCGACCTCGACGCCTGGATGGCCATCGTCCCCTTCAAGGAGGAATGGCAGCGCCAGCACTACTACGAGGGGCTGAAGAAGGCGGGTTTTTGA
PROTEIN sequence
Length: 118
VQASRPDIGLQKIEHAIELNPLPPDEYFWTAAGASYSLGLYRQALDYIARMKDRTAADRLSAASWSMLGDVKKARHFIRRTYAVHPDFDLDAWMAIVPFKEEWQRQHYYEGLKKAGF*