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SCNpilot_expt_1000_bf_scaffold_2863_11

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: comp(7157..8548)

Top 3 Functional Annotations

Value Algorithm Source
DNA-binding transcriptional activator of the SARP family n=1 Tax=Rhizobium sp. AP16 RepID=J2WNU1_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 38.9
  • Coverage: 465.0
  • Bit_score: 284
  • Evalue 2.70e-73
DNA-binding transcriptional regulator SARP family {ECO:0000313|EMBL:EYR78734.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 78.7
  • Coverage: 418.0
  • Bit_score: 634
  • Evalue 1.50e-178
hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 38.9
  • Coverage: 465.0
  • Bit_score: 283
  • Evalue 1.40e-73

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1392
ATGCCGGCGCGGCTGCAGACGCTCGGTCATCTGCGCCTGCTCGACGAGGGCGGTAGCGATATCGTCTTTCCCGAAAAGGCGCTGCTGATCGTCTGCTACCTCCATGCGCGTGGCCTGGCGGACATGCCGAGGGCGGACGCGGCGAGCCTGTTCTGGGACGATACGAACACCGCCGCCGCCTATGCCAGCCTCCGGCAGACCGTCTCGCGCATCCAGAAACGCCAGCGCGAGCTTGGCCGGACCTATCTTGCCTTCACCGACGCAACCATCGCCCTCGGGCCGGAACCGGTCGAAAGCGATGTGGCGCAGGTCCGCGAGGATGCCGGTCTCGACCGTCTCGCCGGACTGCTCACCGAAGACTTCCTCAAGCATGTCCGCCCCGTCAACCGGGCGCTCGCCAGCTGGATTGGCCTGCAACGGGCGGCGCACATGGCCCTGCTGCGCCGCGCCCTCCTAGAAGAGACGGCGGGCGATGGCGGCACTTCCCGGCAAGCCCGCTCGGCCGCCGCCCTTCGCCTGCTGGAGGCAAACCCCGACGACGAGGAGGTGCGCGCGGTCCTGACCGGCCGCCCGGCCGTGCCCACGGCCCTGATGACGCTCCAGCCCGCCGCCCGGGTCCTCGTCCCGGAAGAGGCGGCCGTCGTCCAGCCGCGGCAGAATCCGCCGCGTGTCGTGCTGCTGCCGCCGGTCACCGCCTTCGCCTCGCGCATGGCGGCGCGCTTTTCCGAGGCCCTGATCGAGGACGTCACCATCGGCCTCTGCGCGCTGCGCTCGATCTCGATCATCGCGCCGCACACCGCCGCGCAGATCTCGCTCCAGGCCGACCGCGCCGCGACCTACGAGCGCCACAAGATCAGCTACATCCTGGAGACGCGGCTTCGCGACGAGGGCGATGGACATACGCTCTTCGTCCAGCTCATCTTCTTCGGCAGCGACGAGGTCATCTGGGCCGAGCGCTTCCCGCTTTCGGCCGAGGGGCTCGCCCGGTCCCGGCAGATGATCGCGCACCAGATCGCCGGCGCCATCGCCACCGAGATCGAGCGCAACGAACTGGTGCGCGGCGATTACGAACGCGACGCCGATGCCTATCGCAGCTTCCTGATCGGCCAGGGGCAGTTGAAGAACCTCGACCTGCGCGACATCCGCCGTGCCCGCAAGAGCTTTCGCGAGGCCCTGCAACTGAGCGCCGGCTTCGCCCCGGCCCTCGGCGGCCTCGCCCGCAGCTACTTCCTCGAATGGCTCGTGACGGCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACGACCGCCTGCCCTCCGGCTACCGCGAACTCGGTGTCGTCAAGCTCTATGCCCGCCAGTTCGACGAAAGCGCCGCCTATCTCGACCGCGCCGAGGCCCTGA
PROTEIN sequence
Length: 464
MPARLQTLGHLRLLDEGGSDIVFPEKALLIVCYLHARGLADMPRADAASLFWDDTNTAAAYASLRQTVSRIQKRQRELGRTYLAFTDATIALGPEPVESDVAQVREDAGLDRLAGLLTEDFLKHVRPVNRALASWIGLQRAAHMALLRRALLEETAGDGGTSRQARSAAALRLLEANPDDEEVRAVLTGRPAVPTALMTLQPAARVLVPEEAAVVQPRQNPPRVVLLPPVTAFASRMAARFSEALIEDVTIGLCALRSISIIAPHTAAQISLQADRAATYERHKISYILETRLRDEGDGHTLFVQLIFFGSDEVIWAERFPLSAEGLARSRQMIAHQIAGAIATEIERNELVRGDYERDADAYRSFLIGQGQLKNLDLRDIRRARKSFREALQLSAGFAPALGGLARSYFLEWLVTAPXXXXXXXXXXXXTTACPPATANSVSSSSMPASSTKAPPISTAPRP*