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SCNpilot_expt_1000_bf_scaffold_3001_11

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: 8668..10152

Top 3 Functional Annotations

Value Algorithm Source
3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD {ECO:0000313|EMBL:EYR78622.1}; EC=4.1.1.- {ECO:0000313|EMBL:EYR78622.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.5
  • Coverage: 503.0
  • Bit_score: 900
  • Evalue 1.20e-258
3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC:4.1.1.-); K03182 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [EC:4.1.1.-] similarity KEGG
DB: KEGG
  • Identity: 74.1
  • Coverage: 501.0
  • Bit_score: 767
  • Evalue 3.50e-219
  • rbh
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00035D56B3 similarity UNIREF
DB: UNIREF100
  • Identity: 77.6
  • Coverage: 499.0
  • Bit_score: 807
  • Evalue 9.70e-231
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1485
ATGAAAGCCGATGCTCCCATTCCGCGCCGTTTCGACAGCCTTCAGGATTTCGTCGCCTTGCTGGAACGGCGGGTCTCGCTCGTTCACGAAATAACCGAGATCCATCGCCGCGTGCTGGCCGAGGAAGGGCCGGCGCTGCTTTTCGAGCGGCCGGTCGATGCGGCGGGCAATATCCAGCCGATCCCGCTCCTTGCCAATCTCTTCGGCACGCGCGAGCGCATCGAGTGGGGGCTCGGGCTGGAGGCCGGCGGCCTGCCGCACCTGGCCGGCTTCCTTGCGGACCTGCGCGATCCGCGGCCGCCGCGCTCGCTGCGCGACGCCTGGGGAAAGCTGCCGCATCTGAAGGCCGCGCTCTCGATGAACCCGCGCGAGACGCGGCGTCCGCCCTGCCAGGAGATCGTCTGGCGCGGCGGCGACATCGATCTGGGCCGCCTCCCCATCCAGACCTGCTGGCCGGGCGAACCTGCGCCGCTCGTCACCTGGCCGCTCGTCATCACCCGCGCGCCGGACGATCCATCGGATGTCAATGTCGGCATCTACCGCATGCAGAAGCTCGGCCGCGACCGGCTGGTCATGCGCTGGCTGGCGCATCGCGGCGGGGCGCGGCACCACCGGCTCTGGCAGGCGCTCGGGCGCGACATGCCCGTCGCGGTGGTCATCGGCGCCGATCCCGCGACGATCCTGTCGGCCGTGATGCCGCTGCCCGACGGCATGAGCGAGCTTGCCTTCGCCGGCGTTCTCGGCGGCCGGCGGCAGGAAACGGCAAGCGGCGTCACCGTCCCCCCCCCCGTGCCCGCCGGCGCGGAGATCGTGCTGGAGGGCATGGTCTCGGCAAGCGAGACGGCGGACGAAGGTCCTTACGGCGACCATACCGGCTACTACAACGCCGTCGAGCCCTTCCCGGTCCTGACGCTTTCGGCGATCACCATGCGTCGGAGCCCGCTCTATCTCTCCACCTATACCGGCCGCCCGCCGGACGAGCCGTCGCGGCTCGGCGAGGCGATGAACGAGCTCTTCGTGCCGCTGGTGAAGCGGCAGTTCCCCGAGATCCGCGACCTCTGGCTGCCGCCCGAGGCCTGTTCCTACCGGGCGATGGTCGTCTCCATCGACAAGCGCTATCCCGGCCAGGCGCGGCGCATCATGATGGGCCTGTGGTCGATGCTGCCGCAGTTCAACTACACCAAGCTGATCATCGCGGTGGACGGCGACATCGACGTCCGGAGCTGGCCGGACGTGATGTGGGCGCTCTCCACCCGCTTCGACGCGAGCCGCGACCTGATGGTGGTGGAGAACACGCCCATCGACTATCTCGATTTCGCCTCGCCGAAATCCGGCCTCGGCGGCAAGCTGGGGCTCGACGCGACGACCAAGATCGGCACCGAGACGGACCGCGAATGGGGCCGGGTGCTGGCGATGACGCCTGACGTGACCGCCCGCGTCGACGGCCTGTGGGCGTCCCTGGGCCTTGCCGGAGATTCGACATGA
PROTEIN sequence
Length: 495
MKADAPIPRRFDSLQDFVALLERRVSLVHEITEIHRRVLAEEGPALLFERPVDAAGNIQPIPLLANLFGTRERIEWGLGLEAGGLPHLAGFLADLRDPRPPRSLRDAWGKLPHLKAALSMNPRETRRPPCQEIVWRGGDIDLGRLPIQTCWPGEPAPLVTWPLVITRAPDDPSDVNVGIYRMQKLGRDRLVMRWLAHRGGARHHRLWQALGRDMPVAVVIGADPATILSAVMPLPDGMSELAFAGVLGGRRQETASGVTVPPPVPAGAEIVLEGMVSASETADEGPYGDHTGYYNAVEPFPVLTLSAITMRRSPLYLSTYTGRPPDEPSRLGEAMNELFVPLVKRQFPEIRDLWLPPEACSYRAMVVSIDKRYPGQARRIMMGLWSMLPQFNYTKLIIAVDGDIDVRSWPDVMWALSTRFDASRDLMVVENTPIDYLDFASPKSGLGGKLGLDATTKIGTETDREWGRVLAMTPDVTARVDGLWASLGLAGDST*