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SCNpilot_expt_1000_bf_scaffold_3093_11

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: comp(10747..11676)

Top 3 Functional Annotations

Value Algorithm Source
PREDICTED: probable RuBisCO transcriptional regulator-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C192A7 similarity UNIREF
DB: UNIREF100
  • Identity: 58.6
  • Coverage: 304.0
  • Bit_score: 355
  • Evalue 4.80e-95
  • rbh
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 39.0
  • Coverage: 305.0
  • Bit_score: 216
  • Evalue 1.10e-53
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEF22481.1}; TaxID=743720 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fulva (strain 12-X).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 39.0
  • Coverage: 305.0
  • Bit_score: 216
  • Evalue 4.90e-53

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Taxonomy

Pseudomonas fulva → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 930
ATGAAAGCGCACTTCCTCAAGCTCAATCAGCTCCGGTTCATCGATGCCCTCAAGCGCAAGGGCAAGCTCAGCCTTGCCGCCGAGGAGATGAACATCTCGCAGCCGGCCGCCTCGCGCACGCTCGCCGACATCGAGGCGCTCGTCGGCCAGCAGATCTGCACGCGCAACGCGCACGGCTTCGTCTTCAACGAGTTCGGCGACGTGCTGGCGGCCCGCGCGAGCCGCGTTGTCGCGGAGGTGGAGAATATCGGCCGCGACATCCGCGAGGTGGCGGACGGCCTGCGCGGCCGGGTGCGGATCGGCGCGGTGACGGCGGCGGCCATCGCCTATGTGCTGCCCGCCTCGGTGGCGCTGCGCGCGCAGGCGCCGCAGGCCCAGCTCCAGGTGGATGTCGAGCCGAGCCTCACGCTGATGCAGCGCATGCGCGCCGGCGAATACGATTTCGTGCTGGCGCGCCTCAGCGCGACCGACGACCCCGCGGCCTACGACGTGCGCCCGATCGGCGAGGAGGTGCTGAGCTTCGCCGTGCGGAAAAACCATCCGCTCGCCGGGCGCGGCAGGCTCGCCTTCCGGGACCTGTCACCCTATGACTGGATCATCCAGCCGGCCGGCTCGCCGATCTGGTCGACGGTGGTCGATGCCTTCCGGGCCGAAGGGGCCGACTTTCCCGAACGGGTGACCTATTCCGCCTCGGCGCTGCTGACGCTGGCGACCGTCGCGCGGACCGATGCCATCGCGCCCTTCGCGCGCGAGGTCGCGGGCCTGCTGATGGCCGAGGACCTCGGCATGCGCATCGTCACGCTCGACATGGCCCGGCCGGCCAGCGTGCCCGCCTACAACCTCATCCTCGACAAGGGCGCGCTGCTTTCCCCGCTCGCCCACCGCTTCCTGTCGCTGATCGAGGCGGAAATGCCGCGTGCCATCCGCTGA
PROTEIN sequence
Length: 310
MKAHFLKLNQLRFIDALKRKGKLSLAAEEMNISQPAASRTLADIEALVGQQICTRNAHGFVFNEFGDVLAARASRVVAEVENIGRDIREVADGLRGRVRIGAVTAAAIAYVLPASVALRAQAPQAQLQVDVEPSLTLMQRMRAGEYDFVLARLSATDDPAAYDVRPIGEEVLSFAVRKNHPLAGRGRLAFRDLSPYDWIIQPAGSPIWSTVVDAFRAEGADFPERVTYSASALLTLATVARTDAIAPFAREVAGLLMAEDLGMRIVTLDMARPASVPAYNLILDKGALLSPLAHRFLSLIEAEMPRAIR*